MolNFT v1 · #137429 · protein + DNA + RNA
X-ray crystal structure of a bacterial reiterative transcription complex of pyrg promoter
5VO8: “X-ray crystal structure of a bacterial reiterative transcription complex of pyrg promoter”. X-ray diffraction, 3 ligands (POP, MG, ZN). MolNFT v1 #137429 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VO8
- Type
- protein + DNA + RNA
- Length
- 3,527 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5SHR6, Q8RQE9, Q8RQE8, Q8RQE7, Q5SKW1
- Ligands
- POP, MG, ZN
Structure
x-ray diffraction · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 226 | — | Q5SHR6 |
| B | — | protein | 224 | — | Q5SHR6 |
| C | — | protein | 1107 | — | Q8RQE9 |
| D | — | protein | 1484 | — | Q8RQE8 |
| E | — | protein | 94 | — | Q8RQE7 |
| F | — | protein | 346 | — | Q5SKW1 |
| G | — | dna | 19 | — | — |
| H | — | dna | 19 | — | — |
| I | — | rna | 8 | — | — |
Ligands and binding sites
- POP · Pyrophosphate 2- · ligand · chains C, D
- MG · Magnesium ion · metal · 2 copies · chains B, D, I
- ZN · Zinc ion · metal · 2 copies · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VO8 · X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter · the same entry in another collection · chain I against I, TM-score 1.00
- Q8RQE7 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (Q8RQE7) · a predicted model of the same protein · chain E against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SHR6
- Every structure of UniProt Q8RQE9
- Every structure of UniProt Q8RQE8
- Every structure of UniProt Q8RQE7
- Every structure of UniProt Q5SKW1
- Elsewhere: RCSB PDB 5VO8 · PDBe 5VO8 · UniProt Q5SHR6 · UniProt Q8RQE9 · UniProt Q8RQE8 · UniProt Q8RQE7 · UniProt Q5SKW1
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