MolNFT v1 · #127996 · protein
Microtubule-bound MKLP2 motor domain in the with no nucleotide
5ND3: “Microtubule-bound MKLP2 motor domain in the with no nucleotide”. Electron microscopy, 4 ligands (GTP, GDP, TA1). MolNFT v1 #127996 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ND3
- Type
- protein
- Length
- 1,134 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P97329, F2Z4C1, Q6B856
- Ligands
- GTP, GDP, TA1, MG
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 296 | — | P97329 |
| A | — | protein | 412 | — | F2Z4C1 |
| B | — | protein | 426 | — | Q6B856 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · chains A, B
- GDP · Guanosine-5'-diphosphate · ligand · chains B
- TA1 · Taxol · ligand · chains B
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ND3 · Microtubule-bound MKLP2 motor domain in the with no nucleotide · the same entry in another collection · chain A against A, TM-score 1.00
- P97329 · AlphaFold monomer V2.0 prediction for kinesin-like protein KIF20A (P97329) · a predicted model of the same protein · chain C against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P97329
- Every structure of UniProt F2Z4C1
- Every structure of UniProt Q6B856
- Elsewhere: RCSB PDB 5ND3 · PDBe 5ND3 · UniProt P97329 · UniProt F2Z4C1 · UniProt Q6B856
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