MolNFT v1 · #126809 · protein + RNA

Structure of the 30S pre-initiation complex 2 (30S ic-2) stalled by GE81112

5ME1: “Structure of the 30S pre-initiation complex 2 (30S ic-2) stalled by GE81112”. Electron microscopy, 1 ligand (FME). MolNFT v1 #126809 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ME1
Type: protein + RNA
Length: 4,732 residues
Chains: 26
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0A7V0, P0A7V3, P0A7V8, P0A7W1, P02358, P02359, P0A7W7, P0A7X3, P0A7R5, P0A7R9, P0A7S3, P0A7S9, P0AG59, P0ADZ4, D8AGC4, P0AG63, P0A7T7, P0A7U3, P0A7U7, P68679, Q5SHR1, P0A705, P03000, A0A192C6K3
Ligands: FME

Structure

electron microscopy · 26 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	rna	1534	—	—
B	—	protein	224	—	P0A7V0
C	—	protein	206	—	P0A7V3
D	—	protein	205	—	P0A7V8
E	—	protein	155	—	P0A7W1
F	—	protein	106	—	P02358
G	—	protein	151	—	P02359
H	—	protein	129	—	P0A7W7
I	—	protein	127	—	P0A7X3
J	—	protein	99	—	P0A7R5
K	—	protein	117	—	P0A7R9
L	—	protein	123	—	P0A7S3
M	—	protein	114	—	P0A7S9
N	—	protein	100	—	P0AG59
O	—	protein	88	—	P0ADZ4
P	—	protein	82	—	D8AGC4
Q	—	protein	80	—	P0AG63
R	—	protein	55	—	P0A7T7
S	—	protein	79	—	P0A7U3
T	—	protein	86	—	P0A7U7
U	—	protein	56	—	P68679
V	—	protein	71	—	Q5SHR1
W	—	protein	501	—	P0A705
Y	—	protein	76	—	P03000
Z	—	protein	91	—	A0A192C6K3
X	—	rna	77	—	—

Ligands and binding sites

FME · N-formylmethionine · ligand · chains W, X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5ME1 · Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112 · the same entry in another collection · chain J against J, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A7V0
Every structure of UniProt P0A7V3
Every structure of UniProt P0A7V8
Every structure of UniProt P0A7W1
Every structure of UniProt P02358
Every structure of UniProt P02359
Every structure of UniProt P0A7W7
Every structure of UniProt P0A7X3
Every structure of UniProt P0A7R5
Every structure of UniProt P0A7R9
Every structure of UniProt P0A7S3
Every structure of UniProt P0A7S9
Every structure of UniProt P0AG59
Every structure of UniProt P0ADZ4
Every structure of UniProt D8AGC4
Every structure of UniProt P0AG63
Every structure of UniProt P0A7T7
Every structure of UniProt P0A7U3
Every structure of UniProt P0A7U7
Every structure of UniProt P68679
Every structure of UniProt Q5SHR1
Every structure of UniProt P0A705
Every structure of UniProt P03000
Every structure of UniProt A0A192C6K3
Elsewhere: RCSB PDB 5ME1 · PDBe 5ME1 · UniProt P0A7V0 · UniProt P0A7V3 · UniProt P0A7V8 · UniProt P0A7W1 · UniProt P02358 · UniProt P02359 · UniProt P0A7W7 · UniProt P0A7X3 · UniProt P0A7R5 · UniProt P0A7R9 · UniProt P0A7S3 · UniProt P0A7S9 · UniProt P0AG59 · UniProt P0ADZ4 · UniProt D8AGC4 · UniProt P0AG63 · UniProt P0A7T7 · UniProt P0A7U3 · UniProt P0A7U7 · UniProt P68679 · UniProt Q5SHR1 · UniProt P0A705 · UniProt P03000 · UniProt A0A192C6K3

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