MolNFT v1 · #125076 · protein
Mouse POFUT1 in complex with mouse NOTCH1 EGF26 and GDP
5KY4: “Mouse POFUT1 in complex with mouse NOTCH1 EGF26 and GDP”. X-ray diffraction, 2 ligands (GDP, NAG). MolNFT v1 #125076 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KY4
- Type
- protein
- Length
- 389 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q91ZW2, Q01705
- Ligands
- GDP, NAG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 353 | — | Q91ZW2 |
| B | — | protein | 36 | — | Q01705 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- PGO · S-1,2-propanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KY4 · mouse POFUT1 in complex with mouse Notch1 EGF26 and GDP · the same entry in another collection · chain A against A, TM-score 1.00
- Q91ZW2 · AlphaFold monomer V2.0 prediction for GDP-fucose protein O-fucosyltransferase 1 (Q91ZW2) · a predicted model of the same protein · chain A against A, TM-score 1.00
- Q01705 · AlphaFold monomer V2.0 prediction for neurogenic locus notch homolog protein 1 (Q01705) · a predicted model of the same protein · chain B against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91ZW2
- Every structure of UniProt Q01705
- Elsewhere: RCSB PDB 5KY4 · PDBe 5KY4 · UniProt Q91ZW2 · UniProt Q01705
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