MolNFT v1 · #124686 · protein
Near-atomic cryo-EM structure of PRC1 bound to the microtubule
5KMG: “Near-atomic cryo-EM structure of PRC1 bound to the microtubule”. Electron microscopy, 4 ligands (GTP, GDP, POU). MolNFT v1 #124686 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KMG
- Type
- protein
- Length
- 990 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2XVP4, P02554, O43663
- Ligands
- GTP, GDP, POU, MG
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 431 | — | Q2XVP4 |
| B | — | protein | 431 | — | P02554 |
| P | — | protein | 128 | — | O43663 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · chains A, B
- GDP · Guanosine-5'-diphosphate · ligand · chains B
- POU · Peloruside A · ligand · chains B
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KMG · Near-atomic cryo-EM structure of PRC1 bound to the microtubule · the same entry in another collection · chain P against P, TM-score 1.00
- O43663 · AlphaFold monomer V2.0 prediction for protein regulator of cytokinesis 1 (O43663) · a predicted model of the same protein · chain P against A, TM-score 0.79
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2XVP4
- Every structure of UniProt P02554
- Every structure of UniProt O43663
- Elsewhere: RCSB PDB 5KMG · PDBe 5KMG · UniProt Q2XVP4 · UniProt P02554 · UniProt O43663
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