Research workbench
Calicheamicin GAMMA1I-DNA complex, NMR, 6 structures
Analyse Calicheamicin GAMMA1I-DNA complex, NMR, 6 structures in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2PIK
- Type
- DNA
- Length
- 18 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA(5'-D(C*AP*CP*TP*CP*CP*TP*GP*GP*TP*TP*TP*TP* TP*GP*TP*GP*AP*GP*GP*AP*CP*CP)-3')
- Ligands
- DAG, EMP, DSR, HIB, MRP, MTC
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA(5'-D(C*AP*CP*TP*CP*CP*TP*GP*GP*TP*TP*TP*TP* TP*GP*TP*GP*AP*GP*GP*AP*CP*CP)-3') | dna | 18 | — | — |
Ligands and binding sites
- DAG · 4-amino-4,6-dideoxy-beta-D-glucopyranose · ligand · chains A
- EMP · 2,4-dideoxy-4-(ethylamino)-3-O-methyl-alpha-L-threo-pentopyranose · ligand · chains A
- DSR · 2,6-dideoxy-4-thio-beta-D-allopyranose · ligand · chains A
- HIB · 4-hydroxy-5-iodo-2,3-dimethoxy-6-methylbenzoic acid · ligand · chains A
- MRP · 3-O-methyl-alpha-L-rhamnopyranose · ligand · chains A
- MTC · [1,8-dihydroxy-11-oxo-13-(2-methyltrithio-ethylidene)-bicyclo[7.3.1]trideca-4,9-diene-2,6-diyn-10-yl]-carbamic acid methyl ester · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 2PIK · Calicheamicin GAMMA1I-DNA complex, NMR, 6 structures · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2PIK · PDBe 2PIK
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