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Ligand · EMP

EMP · 2,4-dideoxy-4-(ethylamino)-3-O-methyl-alpha-L-threo-pentopyranose

EMP, 2,4-dideoxy-4-(ethylamino)-3-O-methyl-alpha-L-threo-pentopyranose (C8 H17 N O3, 175.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues…

Component
EMP
Formula
C8 H17 N O3
Class
sugar
Structures
4
PDB entries
2

Binding sites

EMP in 4 structures; the first of them:

  • 2L65 · HADDOCK calculated model of the complex of the resistance protein CalC and… · EMP B2
  • 2PIK · Calicheamicin GAMMA1I-DNA complex, NMR, 6 structures · EMP B2 · binds DC5, DC6
  • 2L65 · Haddock calculated model of the complex of the resistance protein calc and… · EMP B2
  • 2PIK · Calicheamicin GAMMA1I-DNA complex, NMR, 6 structures · EMP B2 · binds DC5, DC6

Residues it binds most

DC 2 (residue and the binding sites it lines).

Found with

  • DAG · 4-amino-4,6-dideoxy-beta-D-glucopyranose
  • HIB · 4-hydroxy-5-iodo-2,3-dimethoxy-6-methylbenzoic acid
  • MTC · [1,8-dihydroxy-11-oxo-13-(2-methyltrithio-ethylidene)-bicyclo[7.3.1]trideca-4,9-diene-2,6-diyn-10-yl]-carbamic acid methyl ester
  • DSR · 2,6-dideoxy-4-thio-beta-D-allopyranose
  • MRP · 3-O-methyl-alpha-L-rhamnopyranose

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