Research workbench
Scallop myosin regulatory domain
Analyse Scallop myosin regulatory domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1WDC
- Type
- protein
- Length
- 358 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Scallop myosin
- UniProt
- P24733, P13543, P07291
- Ligands
- MG, CA
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · 3 distinct chains · 62% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Scallop myosin | protein | 64 | 88% helix, 0% strand | P24733 |
| B | Scallop myosin | protein | 142 | 58% helix, 4% strand | P13543 |
| C | Scallop myosin | protein | 152 | 55% helix, 7% strand | P07291 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 155 | 0.54 | 0.80 | 27 | empty |
| 2 | 222 | 0.50 | 0.75 | 34 | empty |
Interfaces
3 interfaces between chains.
- A–C · 1919 Ų buried · 18 hydrogen bonds · protein-protein
- A–B · 1872 Ų buried · 22 hydrogen bonds · protein-protein
- B–C · 226 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 1WDC · Scallop myosin regulatory domain · the same entry in another collection · chain A against A, TM-score 1.00
- P07291 · AlphaFold monomer V2.0 prediction for myosin essential light chain, striated adductor… · a predicted model of the same protein · chain C against A, TM-score 0.98
- P13543 · AlphaFold monomer V2.0 prediction for myosin regulatory light chain, striated adductor… · a predicted model of the same protein · chain B against A, TM-score 0.89
- P24733 · AlphaFold monomer V2.0 prediction for myosin heavy chain, striated muscle (P24733) · a predicted model of the same protein · chain A against A, TM-score 0.62
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24733
- Every structure of UniProt P13543
- Every structure of UniProt P07291
- Elsewhere: RCSB PDB 1WDC · PDBe 1WDC · UniProt P24733 · UniProt P13543 · UniProt P07291
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.