Research workbench
The structure of trichobrasilenol synthase TATC6 in complex with fpp-2
Analyse The structure of trichobrasilenol synthase TATC6 in complex with fpp-2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7W5J
- Type
- protein
- Length
- 678 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Terpene cyclase 6
- EC
- 4.2.3.-, 4.2.3.104, 4.2.3.137, 4.2.3.157, 4.2.3.182, 4.2.3.57
- UniProt
- A0A5S9I252
- Ligands
- FAR, POP, FPP, MG
- Pockets
- 6 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 69% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Terpene cyclase 6 (EC 4.2.3.-, 4.2.3.104, 4.2.3.137, 4.2.3.157, 4.2.3.182, 4.2.3.57) | protein | 340 | 69% helix, 3% strand | A0A5S9I252 |
| B | Terpene cyclase 6 (EC 4.2.3.-, 4.2.3.104, 4.2.3.137, 4.2.3.157, 4.2.3.182, 4.2.3.57) | protein | 338 | 68% helix, 3% strand | A0A5S9I252 |
Ligands and binding sites
- FAR · Farnesyl · ligand · chains A
- POP · Pyrophosphate 2- · ligand · chains A
- FPP · Farnesyl diphosphate · ligand · chains B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- MLI · Malonate ion · additive · 5 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 606 | 0.75 | 0.82 | 50 | FAR, POP, GOL |
| 2 | 600 | 0.74 | 0.81 | 49 | FPP, GOL |
| 3 | 410 | 0.68 | 0.80 | 59 | empty |
| 4 | 155 | 0.48 | 0.77 | 16 | empty |
| 5 | 156 | 0.46 | 0.76 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 894 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7W5J · The structure of trichobrasilenol synthase TaTC6 in complex with FPP-2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A5S9I252
- Elsewhere: RCSB PDB 7W5J · PDBe 7W5J · UniProt A0A5S9I252
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