Research workbench
Matrix arm of active state ci from rotenone-NADH dataset
Analyse Matrix arm of active state ci from rotenone-NADH dataset in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VBZ
- Type
- protein
- Length
- 3,543 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F1RVN1, A0A287BDC0, I3LK43, A0A480VKQ8, F1RGE3, D0G781, A0A5G2RN85, A0A4X1VLA2, A0A480QJC4, A0A4X1TFI3, G8IFA6, F1SHD7, F1SQP4, A0A287BG40, A0A286ZNN4, A0A480JYS1, F1S031, F1S6Q1
- Ligands
- SF4, FES, FMN, NAI, PEE, PLX, 8Q1, NDP, UQ, CDL, 970, MG, ZN
Structure
electron microscopy · 18 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 433 | — | F1RVN1 |
| B | — | protein | 176 | — | A0A287BDC0 |
| C | — | protein | 156 | — | I3LK43 |
| E | — | protein | 115 | — | A0A480VKQ8 |
| F | — | protein | 86 | — | F1RGE3 |
| G | — | protein | 88 | — | D0G781 |
| H | — | protein | 112 | — | A0A5G2RN85 |
| I | — | protein | 97 | — | A0A4X1VLA2 |
| J | — | protein | 342 | — | A0A480QJC4 |
| K | — | protein | 43 | — | A0A4X1TFI3 |
| L | — | protein | 125 | — | G8IFA6 |
| M | — | protein | 690 | — | F1SHD7 |
| N | — | protein | 144 | — | F1SQP4 |
| O | — | protein | 217 | — | A0A287BG40 |
| P | — | protein | 208 | — | A0A286ZNN4 |
| Q | — | protein | 386 | — | A0A480JYS1 |
| T | — | protein | 96 | — | F1S031 |
| W | — | protein | 29 | — | F1S6Q1 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 6 copies · chains A, B, C, Q, M
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains M, O
- FMN · Flavin mononucleotide · ligand · chains A
- NAI · 1,4-dihydronicotinamide adenine dinucleotide · ligand · chains A
- PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine · ligand · chains C, J
- PLX · (9R,11S)-9-({[(1S)-1-hydroxyhexadecyl]oxy}methyl)-2,2-dimethyl-5,7,10-trioxa-2lambda~5~-aza-6lambda~5~-phosphaoctacosane-6,6,11-triol · ligand · chains C, N
- 8Q1 · S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy) butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate · ligand · chains E, G
- NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate · ligand · chains C, J
- UQ · Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer · ligand · chains J
- CDL · Cardiolipin · ligand · chains I, N
- 970 · (2r,6as,12as)-8,9-dimethoxy-2-(prop-1-en-2-yl)-1,2,12, 12A-tetrahydrofuro[2',3':7,8][1]benzopyrano[2,3-c][1]benzopyran-6(6ah)-one · ligand · chains C, Q
- MG · Magnesium ion · metal · chains M
- ZN · Zinc ion · metal · chains T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VBZ · Matrix arm of active state CI from Rote -NADH dataset · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F1RVN1
- Every structure of UniProt A0A287BDC0
- Every structure of UniProt I3LK43
- Every structure of UniProt A0A480VKQ8
- Every structure of UniProt F1RGE3
- Every structure of UniProt D0G781
- Every structure of UniProt A0A5G2RN85
- Every structure of UniProt A0A4X1VLA2
- Every structure of UniProt A0A480QJC4
- Every structure of UniProt A0A4X1TFI3
- Every structure of UniProt G8IFA6
- Every structure of UniProt F1SHD7
- Every structure of UniProt F1SQP4
- Every structure of UniProt A0A287BG40
- Every structure of UniProt A0A286ZNN4
- Every structure of UniProt A0A480JYS1
- Every structure of UniProt F1S031
- Every structure of UniProt F1S6Q1
- Elsewhere: RCSB PDB 7VBZ · PDBe 7VBZ · UniProt F1RVN1 · UniProt A0A287BDC0 · UniProt I3LK43 · UniProt A0A480VKQ8 · UniProt F1RGE3 · UniProt D0G781 · UniProt A0A5G2RN85 · UniProt A0A4X1VLA2 · UniProt A0A480QJC4 · UniProt A0A4X1TFI3 · UniProt G8IFA6 · UniProt F1SHD7 · UniProt F1SQP4 · UniProt A0A287BG40 · UniProt A0A286ZNN4 · UniProt A0A480JYS1 · UniProt F1S031 · UniProt F1S6Q1
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