Research workbench
Structure of thermostabilised human ntcp in complex with megabody 91
Analyse Structure of thermostabilised human ntcp in complex with megabody 91 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7PQQ
- Type
- protein
- Length
- 417 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SODIUM/BILE acid cotransporter; Anti-ron NANOBODY,MEGABODY 91,GLUCOSIDASE ygjk
- EC
- 3.2.1.-
- UniProt
- Q14973, P42592
- Pockets
- 3 · best druggability 0.74
Structure
electron microscopy · 2 distinct chains · 49% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SODIUM/BILE acid cotransporter | protein | 298 | 68% helix, 1% strand | Q14973 |
| B | Anti-ron NANOBODY,MEGABODY 91,GLUCOSIDASE ygjk (EC 3.2.1.-) | protein | 119 | 3% helix, 42% strand | P42592 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 777 | 0.74 | 0.79 | 51 | empty |
| 2 | 156 | 0.43 | 0.75 | 19 | empty |
| 3 | 94 | 0.42 | 0.77 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 946 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7PQQ · Structure of thermostabilised human NTCP in complex with Megabody 91 · the same entry in another collection · chain A against A, TM-score 1.00
- Q14973 · AlphaFold monomer V2.0 prediction for SODIUM/BILE acid cotransporter (Q14973) · a predicted model of the same protein · chain A against A, TM-score 0.77
- P42592 · AlphaFold monomer V2.0 prediction for glucosidase ygjk (P42592) · a predicted model of the same protein · chain B against A, TM-score 0.42
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q14973
- Every structure of UniProt P42592
- Elsewhere: RCSB PDB 7PQQ · PDBe 7PQQ · UniProt Q14973 · UniProt P42592
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