MolNFT v1 · #530678 · protein
AlphaFold monomer V2.0 prediction for glucosidase ygjk (P42592)
P42592: “AlphaFold monomer V2.0 prediction for glucosidase ygjk (P42592)”. 6 pockets (best druggability 0.59). MolNFT v1 #530678 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P42592
- Type
- protein
- Length
- 783 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf87a97E0A4bB354D834857B14296240B167cbe70
- Molecule
- Glucosidase ygjk
- UniProt
- P42592
- Pockets
- 6 · best druggability 0.59
Structure
1 distinct chain · 34% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucosidase ygjk | protein | 783 | 34% helix, 23% strand | P42592 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 301 | 0.59 | 0.77 | 33 | empty |
| 2 | 182 | 0.54 | 0.79 | 22 | empty |
| 3 | 112 | 0.42 | 0.76 | 24 | empty |
| 4 | 103 | 0.40 | 0.77 | 20 | empty |
| 5 | 100 | 0.35 | 0.74 | 20 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3W7W · Crystal structure of E. COLI ygjk E727A complexed with 2-O-alpha-D… · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 3W7W · Crystal structure of E. coli YgjK E727A complexed with… · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 3W7S · Escherichia coli K12 YgjK complexed with glucose · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 3W7S · Escherichia COLI K12 ygjk complexed with glucose · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 3W7T · Escherichia COLI K12 ygjk complexed with mannose · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 3W7T · Escherichia coli K12 YgjK complexed with mannose · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 5GW7 · Crystal structure of the glycosynthase mutant E727A of Escherichia coli GH63 glycosidase… · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 5GW7 · Crystal structure of the glycosynthase mutant E727A of escherichia COLI GH63 glycosidase… · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 5CA3 · Crystal structure of the glycosynthase mutant D324N of escherichia COLI GH63 glycosidase… · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 5CA3 · Crystal structure of the glycosynthase mutant D324N of Escherichia coli GH63 glycosidase… · an experimental structure of the same protein · chain A against B, TM-score 0.96
- 3D3I · Crystal structural of escherichia COLI K12 ygjk, a glucosidase belonging to glycoside… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 3D3I · Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside… · an experimental structure of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42592
- Elsewhere: UniProt P42592 · AlphaFold DB P42592
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