Research workbench
RNA polymerase II dimer (class 2)
Analyse RNA polymerase II dimer (class 2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OZO
- Type
- protein
- Length
- 6,774 residues
- Chains
- 24
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0B8RVL1, A0A481DF93, A0A287ADR4, I3LSI7, F1SKN8, I3LJZ9, A0A4X1ULF2, P60899, A0A7K6NXI9, A0A4X1UK25, I3LN51
- Ligands
- ZN
Structure
electron microscopy · 12 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, M | — | protein | 1033 | — | — |
| B, N | — | protein | 1023 | — | A0A0B8RVL1 |
| C, O | — | protein | 257 | — | A0A481DF93 |
| D, P | — | protein | 129 | — | A0A287ADR4 |
| E, Q | — | protein | 209 | — | I3LSI7 |
| F, R | — | protein | 79 | — | F1SKN8 |
| G, S | — | protein | 171 | — | I3LJZ9 |
| H, T | — | protein | 148 | — | A0A4X1ULF2 |
| I, U | — | protein | 114 | — | P60899 |
| J, V | — | protein | 65 | — | A0A7K6NXI9 |
| K, W | — | protein | 115 | — | A0A4X1UK25 |
| L, X | — | protein | 44 | — | I3LN51 |
Ligands and binding sites
- ZN · Zinc ion · metal · 10 copies · chains C, I, J, L, O, U, V, X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- P60899 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase II subunit RPB9 (P60899) · a predicted model of the same protein · chain I against A, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0B8RVL1
- Every structure of UniProt A0A481DF93
- Every structure of UniProt A0A287ADR4
- Every structure of UniProt I3LSI7
- Every structure of UniProt F1SKN8
- Every structure of UniProt I3LJZ9
- Every structure of UniProt A0A4X1ULF2
- Every structure of UniProt P60899
- Every structure of UniProt A0A7K6NXI9
- Every structure of UniProt A0A4X1UK25
- Every structure of UniProt I3LN51
- Elsewhere: RCSB PDB 7OZO · PDBe 7OZO · UniProt A0A0B8RVL1 · UniProt A0A481DF93 · UniProt A0A287ADR4 · UniProt I3LSI7 · UniProt F1SKN8 · UniProt I3LJZ9 · UniProt A0A4X1ULF2 · UniProt P60899 · UniProt A0A7K6NXI9 · UniProt A0A4X1UK25 · UniProt I3LN51
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.