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Human TRPC5 apo state structure at 3 ångström

Analyse Human TRPC5 apo state structure at 3 ångström in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7E4T
Type
protein
Length
2,656 residues
Chains
4
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9UL62
Ligands
PTY, POV, Y01, YZY, ZN, CA

Structure

electron microscopy · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B, C, D—protein664—Q9UL62

Ligands and binding sites

  • PTY · Phosphatidylethanolamine · ligand · 4 copies · chains A, D, B, C
  • POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate · ligand · 4 copies · chains A, D, B, C
  • Y01 · Cholesterol hemisuccinate · ligand · 4 copies · chains A, D, B, C
  • YZY · (2S)-2-(hexadecanoyloxy)-3-hydroxypropyl (9Z)-octadec-9-enoate · ligand · 4 copies · chains A, D, B, C
  • ZN · Zinc ion · metal · 4 copies · chains A, B, C, D
  • CA · Calcium ion · metal · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7E4T · Human TRPC5 apo state structure at 3 angstrom · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9UL62 · AlphaFold monomer V2.0 prediction for short transient receptor potential channel 5… · a predicted model of the same protein · chain A against A, TM-score 0.99

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