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Crystal structure of bacillus paralicheniformis wild-type alpha- amylase

Analyse Crystal structure of bacillus paralicheniformis wild-type alpha- amylase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6TOY
Type: protein
Length: 481 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Amylase
EC: 3.2.1.1
UniProt: I3P686
Ligands: CA, NA
Pockets: 1 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Amylase (EC 3.2.1.1)	protein	481	27% helix, 25% strand	I3P686

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A
NA · Sodium ion · metal · 2 copies · chains A
ACY · Acetic acid · additive · 3 copies · chains A
MLI · Malonate ion · additive · chains A
FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	181	0.54	0.79	25	MLI

Compared structures

6TOY · Crystal structure of Bacillus paralicheniformis wild-type alpha-amylase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt I3P686
Elsewhere: RCSB PDB 6TOY · PDBe 6TOY · UniProt I3P686

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