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The crystal structure of kanamycin B dioxygenase (kanj) from streptomyces kanamyceticus in complex with nickel, sulfate, soaked with iodide

Analyse The crystal structure of kanamycin B dioxygenase (kanj) from streptomyces… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6S0T
Type: protein
Length: 1,664 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q6L732
Ligands: NI, SO4, IOD

Structure

x-ray diffraction · 6 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	276	—	Q6L732
B	—	protein	284	—	Q6L732
C	—	protein	277	—	Q6L732
D	—	protein	278	—	Q6L732
E	—	protein	274	—	Q6L732
F	—	protein	275	—	Q6L732

Ligands and binding sites

NI · Nickel (II) ion · metal · 6 copies · chains A, B, C, D, E, F
SO4 · Sulfate ion · ion · 23 copies · chains A, B, C, D, E, F
IOD · Iodide ion · ion · 2 copies · chains B, C, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6S0T · The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus… · the same entry in another collection · chain F against F, TM-score 1.00
Q6L732 · AlphaFold monomer V2.0 prediction for kanamycin B dioxygenase (Q6L732) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6L732
Elsewhere: RCSB PDB 6S0T · PDBe 6S0T · UniProt Q6L732

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