Research workbench
NMR data-driven model of KRAS-GMPPNP:RBD-crd complex tethered to a nanodisc (state B)
Analyse NMR data-driven model of KRAS-GMPPNP:RBD-crd complex tethered to a nanodisc… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6PTW
- Type
- protein
- Length
- 713 residues
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P02647, P01116, P04049
- Ligands
- PCW, 17F, GNP, ZN, MG
Structure
solution nmr · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 198 | — | P02647 |
| B | — | protein | 185 | — | P01116 |
| D | — | protein | 132 | — | P04049 |
Ligands and binding sites
- PCW · 1,2-dioleoyl-sn-glycero-3-phosphocholine · ligand · 64 copies · chains A, C, D, B
- 17F · O-[(S)-({(2R)-2,3-bis[(9Z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-L-serine · ligand · 16 copies · chains A, C, D
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains B
- ZN · Zinc ion · metal · 2 copies · chains D
- MG · Magnesium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PTW · NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state B) · the same entry in another collection · chain B against B, TM-score 1.00
- P02647 · AlphaFold monomer V2.0 prediction for apolipoprotein a-I (P02647) · a predicted model of the same protein · chain A against A, TM-score 0.59
- P04049 · AlphaFold monomer V2.0 prediction for RAF proto-oncogene SERINE/THREONINE-protein kinase… · a predicted model of the same protein · chain D against A, TM-score 0.53
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02647
- Every structure of UniProt P01116
- Every structure of UniProt P04049
- Elsewhere: RCSB PDB 6PTW · PDBe 6PTW · UniProt P02647 · UniProt P01116 · UniProt P04049
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