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Crystal structure of human protocadherin-1 EC3-4

Analyse Crystal structure of human protocadherin-1 EC3-4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6PIM
Type: protein
Length: 200 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protocadherin-1
UniProt: Q08174
Ligands: CA
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protocadherin-1	protein	200	7% helix, 44% strand	Q08174

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	101	0.43	0.78	15	empty

Compared structures

6PIM · Crystal Structure of Human Protocadherin-1 EC3-4 · the same entry in another collection · chain A against A, TM-score 1.00
Q08174 · AlphaFold monomer V2.0 prediction for protocadherin-1 (Q08174) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q08174
Elsewhere: RCSB PDB 6PIM · PDBe 6PIM · UniProt Q08174

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