MolNFT v1 · #289390 · protein
AlphaFold monomer V2.0 prediction for protocadherin-1 (Q08174)
Q08174: “AlphaFold monomer V2.0 prediction for protocadherin-1 (Q08174)”. 2 pockets (best druggability 0.47). MolNFT v1 #289390 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q08174
- Type
- protein
- Length
- 1,060 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xaa53776A41fB2e67da75A96E8a53746b6874aAB4
- Molecule
- Protocadherin-1
- UniProt
- Q08174
- Pockets
- 2 · best druggability 0.47
Structure
1 distinct chain · 7% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protocadherin-1 | protein | 1060 | 7% helix, 33% strand | Q08174 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 225 | 0.47 | 0.74 | 30 | empty |
| 2 | 140 | 0.42 | 0.75 | 20 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6VFP · Crystal structure of human protocadherin 1 EC1-EC4 · an experimental structure of the same protein · chain A against A, TM-score 0.39
- 6MGA · Crystal structure of human protocadherin-1 EC1-4 with glycosylation · an experimental structure of the same protein · chain A against A, TM-score 0.39
- 6MGA · Crystal Structure of Human Protocadherin-1 EC1-4 with glycosylation · an experimental structure of the same protein · chain A against A, TM-score 0.39
- 6BX7 · Crystal structure of human protocadherin-1 EC1-4 · an experimental structure of the same protein · chain A against A, TM-score 0.38
- 6PIM · Crystal structure of human protocadherin-1 EC3-4 · an experimental structure of the same protein · chain A against A, TM-score 0.19
- 6PIM · Crystal Structure of Human Protocadherin-1 EC3-4 · an experimental structure of the same protein · chain A against A, TM-score 0.19
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08174
- Elsewhere: UniProt Q08174 · AlphaFold DB Q08174
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