Research workbench

LSD1-corest-S2116 five-membered ring adduct model

Analyse LSD1-corest-S2116 five-membered ring adduct model in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6KGM
Type: protein
Length: 793 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O60341, Q9UKL0
Ligands: DJ0, FAD

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	661	—	O60341
B	—	protein	132	—	Q9UKL0

Ligands and binding sites

DJ0 · 3-[3,5-bis(fluoranyl)-2-phenylmethoxy-phenyl]propanal · ligand · chains A
FAD · Flavin-adenine dinucleotide · ligand · chains A
GOL · Glycerol · additive · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6KGM · LSD1-CoREST-S2116 five-membered ring adduct model · the same entry in another collection · chain A against A, TM-score 1.00
Q9UKL0 · AlphaFold monomer V2.0 prediction for rest corepressor 1 (Q9UKL0) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O60341
Every structure of UniProt Q9UKL0
Elsewhere: RCSB PDB 6KGM · PDBe 6KGM · UniProt O60341 · UniProt Q9UKL0

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