Research workbench
RNA polymerase II elongation complex bound with ELF1 and SPT4/5, stalled at shl(-5) of the nucleosome
Analyse RNA polymerase II elongation complex bound with ELF1 and SPT4/5, stalled at… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6J4W
- Type
- protein + DNA + RNA
- Length
- 5,477 residues
- Chains
- 26
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, F2QTN1, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370, P84243, P62805, P04908, P06899
- Ligands
- ZN, MG
Structure
electron microscopy · 26 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1412 | — | C4R4Y0 |
| B | — | protein | 1157 | — | C4QZQ7 |
| C | — | protein | 263 | — | C4R7L2 |
| D | — | protein | 168 | — | C4R2U9 |
| E | — | protein | 213 | — | C4R3P8 |
| F | — | protein | 84 | — | C4R1V1 |
| G | — | protein | 171 | — | C4R9A1 |
| H | — | protein | 133 | — | C4R273 |
| I | — | protein | 111 | — | F2QPE6 |
| J | — | protein | 66 | — | F2QTN1 |
| K | — | protein | 113 | — | C4R3Z5 |
| L | — | protein | 45 | — | F2QMI1 |
| P | — | rna | 16 | — | — |
| T | — | dna | 171 | — | — |
| N | — | dna | 165 | — | — |
| M | — | protein | 64 | — | C4QZ45 |
| V | — | protein | 102 | — | C4R0E6 |
| W | — | protein | 275 | — | C4R370 |
| a | — | protein | 97 | — | P84243 |
| b | — | protein | 80 | — | P62805 |
| c | — | protein | 103 | — | P04908 |
| d | — | protein | 95 | — | P06899 |
| e | — | protein | 97 | — | P84243 |
| f | — | protein | 78 | — | P62805 |
| g | — | protein | 105 | — | P04908 |
| h | — | protein | 93 | — | P06899 |
Ligands and binding sites
- ZN · Zinc ion · metal · 10 copies · chains A, B, C, I, J, L, M, V
- MG · Magnesium ion · metal · chains A, P
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6J4W · RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-5) of… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4R4Y0
- Every structure of UniProt C4QZQ7
- Every structure of UniProt C4R7L2
- Every structure of UniProt C4R2U9
- Every structure of UniProt C4R3P8
- Every structure of UniProt C4R1V1
- Every structure of UniProt C4R9A1
- Every structure of UniProt C4R273
- Every structure of UniProt F2QPE6
- Every structure of UniProt F2QTN1
- Every structure of UniProt C4R3Z5
- Every structure of UniProt F2QMI1
- Every structure of UniProt C4QZ45
- Every structure of UniProt C4R0E6
- Every structure of UniProt C4R370
- Every structure of UniProt P84243
- Every structure of UniProt P62805
- Every structure of UniProt P04908
- Every structure of UniProt P06899
- Elsewhere: RCSB PDB 6J4W · PDBe 6J4W · UniProt C4R4Y0 · UniProt C4QZQ7 · UniProt C4R7L2 · UniProt C4R2U9 · UniProt C4R3P8 · UniProt C4R1V1 · UniProt C4R9A1 · UniProt C4R273 · UniProt F2QPE6 · UniProt F2QTN1 · UniProt C4R3Z5 · UniProt F2QMI1 · UniProt C4QZ45 · UniProt C4R0E6 · UniProt C4R370 · UniProt P84243 · UniProt P62805 · UniProt P04908 · UniProt P06899
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