Research workbench
Ternary structure of C-myc-tbp-TAF1
Analyse Ternary structure of C-myc-tbp-TAF1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6E16
- Type
- protein
- Length
- 225 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcription initiation factor tfiid subunit 1,MYC proto- oncogene…
- EC
- 2.3.1.48
- UniProt
- P46677, P01106, P13393
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcription initiation factor tfiid subunit 1,MYC proto- oncogene PROTEIN,TATA-box-binding protein (EC 2.3.1.48) | protein | 225 | 34% helix, 28% strand | P46677, P01106, P13393 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.49 | 0.77 | 22 | empty |
Compared structures
- 6E16 · Ternary structure of c-Myc-TBP-TAF1 · the same entry in another collection · chain A against A, TM-score 1.00
- P13393 · AlphaFold monomer V2.0 prediction for tata-box-binding protein (P13393) · a predicted model of the same protein · chain A against A, TM-score 0.84
- P46677 · AlphaFold monomer V2.0 prediction for transcription initiation factor tfiid subunit 1… · a predicted model of the same protein · chain A against A, TM-score 0.30
- P01106 · AlphaFold monomer V2.0 prediction for myc proto-oncogene protein (P01106) · a predicted model of the same protein · chain A against A, TM-score 0.21
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46677
- Every structure of UniProt P01106
- Every structure of UniProt P13393
- Elsewhere: RCSB PDB 6E16 · PDBe 6E16 · UniProt P46677 · UniProt P01106 · UniProt P13393
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