Crystal structure of ribose-1,5-bisphosphate isomerase from pyrococcus horikoshii OT3 in complex with ribulose-1,5-bisphosphate, AMP and gmp

Structure

x-ray diffraction · 1 distinct chain.

Ligands and binding sites

• RUB · Ribulose-1,5-diphosphate · ligand · 3 copies · chains A, B, C
• AMP · Adenosine monophosphate · ligand · 3 copies · chains A, B, C
• G · Guanosine-5'-monophosphate · ligand · 2 copies · chains B, C
• K · Potassium ion · metal · 3 copies · chains A, B, C
• MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 5YG8 · Crystal structure of ribose-1,5-bisphosphate isomerase from Pyrococcus horikoshii OT3 in… · the same entry in another collection · chain C against C, TM-score 1.00
• O57947 · AlphaFold monomer V2.0 prediction for ribose 1,5-bisphosphate isomerase (O57947) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt O57947
• Elsewhere: RCSB PDB 5YG8 · PDBe 5YG8 · UniProt O57947