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Ligand · RUB

RUB · Ribulose-1,5-diphosphate

RUB, Ribulose-1,5-diphosphate (C5 H12 O11 P2, 310.1 g/mol), in the MolNFT structures on GenesisL1: bound in 11 records (7 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
RUB
Formula
C5 H12 O11 P2
Class
ligand
Structures
11
PDB entries
7

Binding sites

RUB in 11 structures; the first of them:

  • 5YFU · Crystal structure of ribose-1,5-bisphosphate isomerase from Pyrococcus horikoshii OT3 in… · RUB A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ILE27, ARG65, CYS135 and 13 more
  • 5YG5 · Crystal structure of ribose-1,5-bisphosphate isomerase from Pyrococcus horikoshii OT3 in… · RUB A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ILE27, ARG65, CYS135 and 12 more
  • 5Z49 · Crystal structure of the effector-binding domain of Synechococcus elongatus CmpR in… · RUB A401 · binds THR102, LYS105, VAL128, SER225, ASN226, GLU227, LYS105, TYR106 and 5 more
  • 8UHI · Structure of the far-red light-absorbing allophycocyanin core expressed during FaRLiP · RUB A501 · binds THR174, LYS176, KCX202, ASP204, GLU205, HIS295, ARG296, HIS299 and 13 more
  • 9RUB · Crystal structure of activated ribulose-1,5-bisphosphate carboxylase complexed with its… · RUB A600 · binds ILE164, ASP193, GLU194, HIS287, ARG288, HIS321, GLY323, ILE366 and 8 more
  • 5YFJ · Crystal structure of ribose-1,5-bisphosphate isomerase from pyrococcus horikoshii OT3 in… · RUB A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ARG65, CYS135, HIS136 and 10 more
  • 5YFU · Crystal structure of ribose-1,5-bisphosphate isomerase from pyrococcus horikoshii OT3 in… · RUB A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ARG65, CYS135, HIS136 and 10 more
  • 5YG5 · Crystal structure of ribose-1,5-bisphosphate isomerase from pyrococcus horikoshii OT3 in… · RUB A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ARG65, CYS135, HIS136 and 10 more
  • 5YG8 · Crystal structure of ribose-1,5-bisphosphate isomerase from pyrococcus horikoshii OT3 in… · RUB A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ARG65, CYS135, HIS136 and 10 more
  • 5Z49 · Crystal structure of the effector-binding domain of synechococcus elongatus cmpr in… · RUB A401 · binds THR102, LYS105, VAL128, SER225, ASN226, GLU227, LYS105, TYR106 and 5 more
  • 9RUB · Crystal structure of activated ribulose-1,5-bisphosphate carboxylase complexed with its… · RUB A600 · binds ILE164, ASP193, ARG288, HIS321, GLY323, ILE366, SER368, GLY369 and 5 more

Residues it binds most

GLY 32, LYS 29, ALA 22, ARG 32, HIS 30, ASN 32, SER 32, ASP 29, PHE 26, THR 14 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • AMP · Adenosine monophosphate
  • MG · Magnesium ion
  • PEG · Di(hydroxyethyl)ether
  • G · Guanosine-5'-monophosphate
  • FMT · Formic acid
  • 5GP · Guanosine-5'-monophosphate
  • CL · Chloride ion

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