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Ligand · G

G · Guanosine-5'-monophosphate

G, Guanosine-5'-monophosphate (C10 H14 N5 O8 P, 363.2 g/mol), in the MolNFT structures on GenesisL1: bound in 14 records (12 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
G
Formula
C10 H14 N5 O8 P
Class
ligand
Structures
14
PDB entries
12

Binding sites

G in 14 structures; the first of them:

  • 5L3S · Structure of the GTPase heterodimer of crenarchaeal SRP54 and FtsY · G A303 · binds VAL134, TYR135, ARG136, PRO137, ALA138, ALA139, TYR140, ASP141 and 3 more
  • 5MFU · PA3825-EAL Mn-pGpG Structure · G A503 · binds GLN25, GLU39, ARG43, ARG53, ASN98, ASP160, ASP161, GLN184 and 6 more
  • 7PD3 · Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7… · G E404 · binds TRP222, ARG266, GLU268
  • 5L3S · Structure of the GTPase heterodimer of crenarchaeal SRP54 and ftsy · G A303 · binds VAL134, TYR135, ARG136, PRO137, ALA138, ALA139, TYR140, ASP141 and 3 more
  • 5MFU · PA3825-eal mn-pgpg structure · G A503 · binds GLN25, GLU39, ARG43, ARG53, ASN98, ASP160, ASP161, GLN184 and 6 more
  • 5YG5 · Crystal structure of ribose-1,5-bisphosphate isomerase from pyrococcus horikoshii OT3 in… · G B404 · binds GLU264, LEU267, ARG268, TRP270, PRO271, ILE274, GLU275, VAL276
  • 5YG6 · Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from pyrococcus… · G A404 · binds PRO258, GLU264, LEU267, ARG268, TRP270, PRO271, ILE274, GLU275 and 1 more
  • 5YG7 · Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from pyrococcus… · G A404 · binds THR207, ASN209, ALA211, LEU250, VAL251, VAL283, PRO285, ARG124 and 3 more

Residues it binds most

ARG 36, PRO 34, VAL 29, GLU 17, TYR 10, ASP 25, ALA 18, LEU 23, TRP 18, ASN 16 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • RI2 · 1,5-di-O-phosphono-alpha-D-ribofuranose
  • MG · Magnesium ion
  • ZN · Zinc ion
  • AMP · Adenosine monophosphate
  • GOL · Glycerol
  • A · Adenosine-5'-monophosphate
  • GNP · Phosphoaminophosphonic acid-guanylate ester
  • RUB · Ribulose-1,5-diphosphate
  • U · Uridine-5'-monophosphate
  • CA · Calcium ion

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