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Ligand · RI2

RI2 · 1,5-di-O-phosphono-alpha-D-ribofuranose

RI2, 1,5-di-O-phosphono-alpha-D-ribofuranose (C5 H12 O11 P2, 310.1 g/mol), in the MolNFT structures on GenesisL1: bound in 14 records (9 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
RI2
Formula
C5 H12 O11 P2
Class
ligand
Structures
14
PDB entries
9

Binding sites

RI2 in 14 structures; the first of them:

  • 5YFS · Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from Pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ARG65, SER135, HIS136 and 10 more
  • 5YFV · Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from Pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ILE27, ARG65, SER135 and 12 more
  • 5YFX · Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from Pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ILE27, ARG65, CYS135 and 12 more
  • 5YG6 · Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from Pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ILE27, ARG65, SER135 and 11 more
  • 5YGA · Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from Pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ARG65, CYS135, HIS136 and 12 more
  • 5YFS · Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ARG65, SER135, HIS136 and 10 more
  • 5YFT · Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ARG65, CYS135, HIS136 and 11 more
  • 5YFV · Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ILE27, ARG65, SER135 and 12 more
  • 5YFW · Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ARG65, CYS135, HIS136 and 11 more
  • 5YFX · Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ILE27, ARG65, CYS135 and 12 more
  • 5YG6 · Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ILE27, ARG65, SER135 and 11 more
  • 5YG7 · Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ARG65, CYS135, HIS136 and 11 more
  • 5YG9 · Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ILE27, ARG65, SER135 and 12 more
  • 5YGA · Crystal structure of ribose-1,5-bisphosphate isomerase mutant D204N from pyrococcus… · RI2 A401 · binds MET19, ARG22, GLY23, ALA24, GLY25, ARG65, CYS135, HIS136 and 11 more

Residues it binds most

ALA 38, LYS 38, GLY 38, ARG 38, SER 38, ASN 38, GLN 38, MET 38, PHE 38, HIS 36 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • AMP · Adenosine monophosphate
  • G · Guanosine-5'-monophosphate
  • CL · Chloride ion
  • MRD · (4R)-2-methylpentane-2,4-diol
  • 5GP · Guanosine-5'-monophosphate
  • EDO · 1,2-ethanediol
  • PEG · Di(hydroxyethyl)ether

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