Research workbench
Enah EVH1 in complex with ac-[2-cl-F]-pp-[prom-9]-oh
Analyse Enah EVH1 in complex with ac-[2-cl-F]-pp-[prom-9]-oh in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5NBX
- Type
- protein
- Length
- 221 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein enabled homolog
- UniProt
- Q8N8S7
- Ligands
- PRO, 2L5, 8SN, BR
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein enabled homolog | protein | 109 | 18% helix, 49% strand | Q8N8S7 |
| B | Protein enabled homolog | protein | 112 | 18% helix, 51% strand | Q8N8S7 |
Ligands and binding sites
- PRO · Proline · ligand · 4 copies · chains A, B
- 2L5 · 2-chloro-L-phenylalanine · ligand · 2 copies · chains A, B
- 8SN · (3~{S},7~{R},10~{R},11~{R},13~{S})-11-methyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid · ligand · 2 copies · chains A, B
- BR · Bromide ion · ion · chains A
- ACY · Acetic acid · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 208 | 0.46 | 0.74 | 24 | 2L5, PRO, ACY |
Interfaces
1 interface between chains.
- A–B · 527 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N8S7
- Elsewhere: RCSB PDB 5NBX · PDBe 5NBX · UniProt Q8N8S7
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