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Heterotrimeric complex of the 4 alanine insertion variant of the gi ALPHA1 subunit and the GBETA1-GGAMMA1

Analyse Heterotrimeric complex of the 4 alanine insertion variant of the gi ALPHA1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5KDO
Type
protein
Length
731 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P10824, P62871, P02698
Ligands
GDP

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein340—P10824
B—protein335—P62871
G—protein56—P02698

Ligands and binding sites

  • GDP · Guanosine-5'-diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5KDO · Heterotrimeric complex of the 4 alanine insertion variant of the Gi alpha1 subunit and… · the same entry in another collection · chain B against B, TM-score 1.00
  • P62871 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I)/G(S)/G(T)… · a predicted model of the same protein · chain B against A, TM-score 0.99
  • P02698 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(T) subunit… · a predicted model of the same protein · chain G against A, TM-score 0.94
  • P10824 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(I) subunit… · a predicted model of the same protein · chain A against A, TM-score 0.92

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