Research workbench
Crystal structure of RNA R(GCUGCUGC) with antisense pna P(GCAGCAGC)
Analyse Crystal structure of RNA R(GCUGCUGC) with antisense pna P(GCAGCAGC) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5EMF
- Type
- RNA
- Length
- 8 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3')
- Ligands
- GPN, CPN, APN, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3') | rna | 8 | — | — |
Ligands and binding sites
- GPN · 2-aminoethylglycine-carbonylmethylene-guanine · ligand · 3 copies · chains A
- CPN · 2-aminoethylglycine-carbonylmethylene-cytosine · ligand · 3 copies · chains A
- APN · 2-aminoethylglycine-carbonylmethylene-adenine · ligand · 2 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5EMF · Crystal structure of RNA r(GCUGCUGC) with antisense PNA p(GCAGCAGC) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5EMF · PDBe 5EMF
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