Research workbench
Crystal structure of the human glucagon receptor (gcgr) in complex with the antagonist mk-0893
Analyse Crystal structure of the human glucagon receptor (gcgr) in complex with the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5EE7
- Type
- protein
- Length
- 416 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucagon RECEPTOR,ENDOLYSIN,GLUCAGON receptor
- EC
- 3.2.1.17
- UniProt
- P47871, P00720
- Ligands
- OLA, 5MV
- Pockets
- 5 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 76% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucagon RECEPTOR,ENDOLYSIN,GLUCAGON receptor (EC 3.2.1.17) | protein | 416 | 76% helix, 4% strand | P47871, P00720 |
Ligands and binding sites
- OLA · Oleic acid · ligand · 14 copies · chains A
- 5MV · 3-[[4-[(1~{S})-1-[3-[3,5-bis(chloranyl)phenyl]-5-(6-methoxynaphthalen-2-yl)pyrazol-1-yl]ethyl]phenyl]carbonylamino]propanoic acid · ligand · chains A
- PE5 · 3,6,9,12,15,18,21,24-octaoxahexacosan-1-ol · additive · chains A
- TLA · L(+)-tartaric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 200 | 0.77 | 0.91 | 29 | PE5 |
| 2 | 429 | 0.62 | 0.76 | 44 | empty |
| 3 | 97 | 0.44 | 0.79 | 25 | empty |
| 4 | 54 | 0.38 | 0.80 | 13 | empty |
| 5 | 110 | 0.37 | 0.74 | 21 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5EE7 · Crystal structure of the human glucagon receptor (GCGR) in complex with the antagonist… · the same entry in another collection · chain A against A, TM-score 1.00
- P47871 · AlphaFold monomer V2.0 prediction for glucagon receptor (P47871) · a predicted model of the same protein · chain A against A, TM-score 0.55
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P47871
- Every structure of UniProt P00720
- Elsewhere: RCSB PDB 5EE7 · PDBe 5EE7 · UniProt P47871 · UniProt P00720
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