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Crystal structure of H-RasQ61L-GppNHp

Analyse Crystal structure of H-RasQ61L-GppNHp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2RGD
Type: protein
Length: 166 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2
Source: Homo sapiens
Molecule: GTPase HRas
UniProt: P01112
Ligands: GNP, MG, CA
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · resolution 2 · 1 distinct chain · 36% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	GTPase HRas	protein	166	36% helix, 27% strand	P01112

Ligands and binding sites

GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A
CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	148	0.56	0.82	31	MG, GNP

Compared structures

2RGD · Crystal structure of H-RASQ61L-gppnhp · the same entry in another collection · chain A against A, TM-score 1.00
P01112 · AlphaFold monomer V2.0 prediction for GTPase HRAS (P01112) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01112
Elsewhere: RCSB PDB 2RGD · PDBe 2RGD · UniProt P01112

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