Research workbench
CryoEM Structure of Inactive SSTR2 bound to Nb6
Analyse CryoEM Structure of Inactive SSTR2 bound to Nb6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7UL5
- Type
- protein
- Length
- 371 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.1
- Source
- Homo sapiens; Lama glama
- Molecule
- Somatostatin receptor type 2; Nanobody 6
- UniProt
- P30874, P41145
- Pockets
- 3 · best druggability 0.70
Structure
electron microscopy · resolution 3.1 · 2 distinct chains · 61% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Somatostatin receptor type 2 | protein | 285 | 79% helix, 4% strand | P30874, P41145 |
| D | Nanobody 6 | protein | 86 | 0% helix, 49% strand | — |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 574 | 0.70 | 0.78 | 39 | empty |
| 2 | 203 | 0.51 | 0.77 | 27 | empty |
| 3 | 86 | 0.41 | 0.78 | 19 | empty |
Interfaces
1 interface between chains.
- A–D · 639 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 7UL5 · Cryoem structure of inactive SSTR2 bound to NB6 · the same entry in another collection · chain A against A, TM-score 1.00
- P30874 · AlphaFold monomer V2.0 prediction for somatostatin receptor type 2 (P30874) · a predicted model of the same protein · chain A against A, TM-score 0.97
- P41145 · AlphaFold monomer V2.0 prediction for kappa-type opioid receptor (P41145) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30874
- Every structure of UniProt P41145
- Elsewhere: RCSB PDB 7UL5 · PDBe 7UL5 · UniProt P30874 · UniProt P41145
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.