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Human quinone reductase type 2

Analyse Human quinone reductase type 2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1QR2
Type
protein
Length
460 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.1
Source
Homo sapiens
Molecule
Protein (quinone reductase type 2)
EC
1.6.99.2
UniProt
P16083
Ligands
FAD, ZN
Pockets
2 · best druggability 0.76

Structure

x-ray diffraction · resolution 2.1 · 1 distinct chain · 43% helix, 16% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BProtein (quinone reductase type 2) (EC 1.6.99.2)protein23043% helix, 16% strandP16083

Ligands and binding sites

  • FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
  • ZN · Zinc ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15830.760.8246FAD
25880.750.8243FAD

Interfaces

1 interface between chains.

  • A–B · 2021 Ų buried · 27 hydrogen bonds · protein-protein

Compared structures

  • 1QR2 · Human quinone reductase type 2 · the same entry in another collection · chain A against A, TM-score 1.00
  • P16083 · AlphaFold monomer V2.0 prediction for ribosyldihydronicotinamide dehydrogenase [quinone]… · a predicted model of the same protein · chain A against A, TM-score 0.99

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