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MolNFT v1 · #19667 · protein

Human quinone reductase type 2

1QR2 · Protein (quinone reductase type 2): “Human quinone reductase type 2”. X-ray diffraction, 2 ligands (FAD, ZN), 2 pockets (best druggability 0.76). MolNFT v1 #19667 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
1QR2
Type
protein
Length
460 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Protein (quinone reductase type 2)
EC
1.6.99.2
UniProt
P16083
Ligands
FAD, ZN
Pockets
2 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 16% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BProtein (quinone reductase type 2) (EC 1.6.99.2)protein23043% helix, 16% strandP16083

Ligands and binding sites

  • FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
  • ZN · Zinc ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15830.760.8246FAD
25880.750.8243FAD

Interfaces

1 interface between chains.

  • A–B · 2021 Ų buried · 27 hydrogen bonds · protein-protein

Compared structures

  • 1QR2 · Human quinone reductase type 2 · the same entry in another collection · chain A against A, TM-score 1.00
  • P16083 · AlphaFold monomer V2.0 prediction for ribosyldihydronicotinamide dehydrogenase [quinone]… · a predicted model of the same protein · chain A against A, TM-score 0.99

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