Research workbench
AlphaFold monomer V2.0 prediction for metal resistance protein YCF1 (P39109)
Analyse AlphaFold monomer V2.0 prediction for metal resistance protein YCF1 (P39109) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P39109
- Type
- protein
- Length
- 1,515 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xaBea2334E0055Ee4315718a06ED8EA4943723724
- Molecule
- Metal resistance protein YCF1
- UniProt
- P39109
- Pockets
- 20 · best druggability 0.82
Structure
1 distinct chain · 64% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Metal resistance protein YCF1 | protein | 1515 | 64% helix, 9% strand | P39109 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1103 | 0.82 | 0.83 | 89 | empty |
| 2 | 1016 | 0.78 | 0.80 | 99 | empty |
| 3 | 63 | 0.70 | 0.96 | 19 | empty |
| 4 | 534 | 0.67 | 0.77 | 58 | empty |
| 5 | 56 | 0.66 | 0.95 | 21 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 9AYC · Tetra-phosphorylated, E1435Q Ycf1 mutant in inward-facing wide conformation · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 8SG4 · E1435Q Ycf1 mutant in dephosphorylated state · an experimental structure of the same protein · chain A against A, TM-score 0.90
- 8SQM · Cleaved Ycf1p Monomer in the IFwide-alpha conformation · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 7MPE · Cryo-EM structure of the yeast cadmium factor 1 protein (YCF1P) · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 7MPE · Cryo-EM structure of the yeast cadmium factor 1 protein (Ycf1p) · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 7M69 · E1435Q YCF1 mutant in inward-facing wide conformation · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 7M69 · E1435Q Ycf1 mutant in inward-facing wide conformation · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 8SQ0 · Cleaved Ycf1p Dimer in the IFwide-beta conformation · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 8SQL · Cleaved Ycf1p Monomer in the Beta Conformation · an experimental structure of the same protein · chain A against A, TM-score 0.85
- 7M68 · E1435Q Ycf1 mutant in inward-facing narrow conformation · an experimental structure of the same protein · chain A against A, TM-score 0.84
- 7M68 · E1435Q YCF1 mutant in inward-facing narrow conformation · an experimental structure of the same protein · chain A against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39109
- Elsewhere: UniProt P39109 · AlphaFold DB P39109
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.