Research workbench
AlphaFold monomer V2.0 prediction for protein translocase subunit secy (P0AGA2)
Analyse AlphaFold monomer V2.0 prediction for protein translocase subunit secy (P0AGA2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0AGA2
- Type
- protein
- Length
- 443 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf4ED13986579E8e227b3ED6c02276c648754EC27
- Molecule
- Protein translocase subunit secy
- UniProt
- P0AGA2
- Pockets
- 6 · best druggability 0.71
Structure
1 distinct chain · 70% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein translocase subunit secy | protein | 443 | 70% helix, 6% strand | P0AGA2 |
Pockets
6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.71 | 0.96 | 23 | empty |
| 2 | 563 | 0.69 | 0.79 | 51 | empty |
| 3 | 260 | 0.69 | 0.84 | 36 | empty |
| 4 | 206 | 0.62 | 0.82 | 22 | empty |
| 5 | 158 | 0.57 | 0.81 | 24 | empty |
Compared structures
- 5NCO · Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome · an experimental structure of the same protein · chain A against g, TM-score 0.83
- 5GAE · RNC in complex with a translocating SecYEG · an experimental structure of the same protein · chain A against g, TM-score 0.82
- 5GAE · Rnc in complex with a translocating secyeg · an experimental structure of the same protein · chain A against g, TM-score 0.82
- 6R7L · Ribosome-bound secyeg translocon in a nanodisc · an experimental structure of the same protein · chain A against Y, TM-score 0.82
- 6R7L · Ribosome-bound SecYEG translocon in a nanodisc · an experimental structure of the same protein · chain A against Y, TM-score 0.82
- 3J45 · Structure of a non-translocating SecY protein channel with the 70S ribosome · an experimental structure of the same protein · chain A against y, TM-score 0.79
- 3J45 · Structure of a non-translocating secy protein channel with the 70S ribosome · an experimental structure of the same protein · chain A against y, TM-score 0.79
- 3J46 · Structure of the secy protein translocation channel in action · an experimental structure of the same protein · chain A against y, TM-score 0.60
- 3J46 · Structure of the SecY protein translocation channel in action · an experimental structure of the same protein · chain A against y, TM-score 0.60
- 5MG3 · EM fitted model of bacterial holo-translocon · an experimental structure of the same protein · chain A against Y, TM-score 0.60
- 5MG3 · EM fitted model of bacterial holo-translocon · an experimental structure of the same protein · chain A against Y, TM-score 0.60
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AGA2
- Elsewhere: UniProt P0AGA2 · AlphaFold DB P0AGA2
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