UniProt P0AGA2
Protein translocase subunit SecY (P0AGA2)
Protein translocase subunit SecY (UniProt P0AGA2): 11 experimental structures and 1 predicted model on GenesisL1, 11 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P0AGA2
- Protein
- Protein translocase subunit SecY
- Experimental structures
- 11
- Predicted models
- 1
- Pockets
- 11 · 3 records with a druggable one
Structures
12 records of P0AGA2 in the MolNFT archive: 11 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3J45 | Structure of a non-translocating SecY protein channel with the 70S ribosome | electron microscopy | y | — | — |
| 3J45 | Structure of a non-translocating secy protein channel with the 70S ribosome | electron microscopy | y | — | — |
| 3J46 | Structure of the SecY protein translocation channel in action | electron microscopy | y | — | — |
| 3J46 | Structure of the secy protein translocation channel in action | electron microscopy | y | — | — |
| 5GAE | RNC in complex with a translocating SecYEG | electron microscopy | g | — | 2 (best 0.84) |
| 5GAE | Rnc in complex with a translocating secyeg | electron microscopy | g | — | — |
| 5MG3 | EM fitted model of bacterial holo-translocon | electron microscopy | Y | — | — |
| 5MG3 | EM fitted model of bacterial holo-translocon | electron microscopy | Y | — | — |
| 5NCO | Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome | electron microscopy | g | — | — |
| 6R7L | Ribosome-bound SecYEG translocon in a nanodisc | electron microscopy | Y | — | 3 (best 0.78) |
| 6R7L | Ribosome-bound secyeg translocon in a nanodisc | electron microscopy | Y | — | — |
| P0AGA2 | AlphaFold monomer V2.0 prediction for protein translocase subunit secy (P0AGA2) | predicted | A | — | 6 (best 0.71) |
Experiment against prediction
- 5GAE chain g against the predicted model P0AGA2: TM-score 0.91, RMSD 2.58 Å
- 5GAE chain g against the predicted model P0AGA2: TM-score 0.91, RMSD 2.58 Å
- 6R7L chain Y against the predicted model P0AGA2: TM-score 0.90, RMSD 2.65 Å
- 6R7L chain Y against the predicted model P0AGA2: TM-score 0.90, RMSD 2.65 Å
- 5NCO chain g against the predicted model P0AGA2: TM-score 0.88, RMSD 3.09 Å
- 3J45 chain y against the predicted model P0AGA2: TM-score 0.80, RMSD 3.96 Å
- 3J45 chain y against the predicted model P0AGA2: TM-score 0.80, RMSD 3.96 Å
- 3J46 chain y against the predicted model P0AGA2: TM-score 0.61, RMSD 5.95 Å
- 3J46 chain y against the predicted model P0AGA2: TM-score 0.61, RMSD 5.95 Å
- 5MG3 chain Y against the predicted model P0AGA2: TM-score 0.60, RMSD 4.92 Å
Elsewhere
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.