Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (A0QWT1)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A0QWT1
- Type
- protein
- Length
- 107 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x025f3b1a898b05AD2731bE6Ab72687b5920c4A3F
- Molecule
- DNA-directed RNA polymerase subunit omega
- UniProt
- A0QWT1
- Pockets
- 1 · best druggability 0.27
Structure
1 distinct chain · 36% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase subunit omega | protein | 107 | 36% helix, 0% strand | A0QWT1 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.27 | 0.75 | 13 | empty |
Compared structures
- 6YYS · Structure of Mycobacterium smegmatis HelD protein in complex with RNA polymerase core… · an experimental structure of the same protein · chain A against E, TM-score 0.73
- 6YYS · Structure of mycobacterium smegmatis held protein in complex with RNA polymerase core… · an experimental structure of the same protein · chain A against E, TM-score 0.73
- 6Z11 · Structure of mycobacterium smegmatis held protein in complex with RNA polymerase core… · an experimental structure of the same protein · chain A against E, TM-score 0.72
- 6VVT · Crystal structure of a mycobacterium smegmatis transcription initiation complex with… · an experimental structure of the same protein · chain A against E, TM-score 0.70
- 6VVT · Crystal structure of a Mycobacterium smegmatis transcription initiation complex with… · an experimental structure of the same protein · chain A against E, TM-score 0.70
- 6CCE · Crystal structure of a Mycobacterium smegmatis RNA polymerase transcription initiation… · an experimental structure of the same protein · chain A against E, TM-score 0.69
- 6CCE · Crystal structure of a mycobacterium smegmatis RNA polymerase transcription initiation… · an experimental structure of the same protein · chain A against E, TM-score 0.69
- 6VVV · Crystal structure of a mycobacterium smegmatis transcription initiation complex with… · an experimental structure of the same protein · chain A against E, TM-score 0.69
- 6DCF · Crystal structure of a mycobacterium smegmatis transcription initiation complex with… · an experimental structure of the same protein · chain A against E, TM-score 0.69
- 6YXU · Structure of Mycobacterium smegmatis HelD protein in complex with RNA polymerase core… · an experimental structure of the same protein · chain A against E, TM-score 0.69
- 6YXU · Structure of mycobacterium smegmatis held protein in complex with RNA polymerase core… · an experimental structure of the same protein · chain A against E, TM-score 0.69
- 5VI5 · Structure of mycobacterium smegmatis transcription initiation complex with a full… · an experimental structure of the same protein · chain A against E, TM-score 0.68
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QWT1
- Elsewhere: UniProt A0QWT1 · AlphaFold DB A0QWT1
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