MolNFT v2 · #173014 · protein
Structure of Mycobacterium smegmatis HelD protein in complex with RNA polymerase core - State I, primary channel engaged
6YXU: “Structure of Mycobacterium smegmatis HelD protein in complex with RNA polymerase core - State I, primary…”. Electron microscopy at 3.08, 2 ligands (ZN, MG). MolNFT v2 #173014 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6YXU
- Type
- protein
- Length
- 3,583 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.08
- Source
- Mycolicibacterium smegmatis MC2 155
- UniProt
- A0QSL8, P60281, A0QS66, A0QWT1, A0QUE0
- Ligands
- ZN, MG
Structure
electron microscopy · resolution 3.08 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 226 | — | A0QSL8 |
| B | — | protein | 233 | — | A0QSL8 |
| C | — | protein | 1088 | — | P60281 |
| D | — | protein | 1269 | — | A0QS66 |
| E | — | protein | 76 | — | A0QWT1 |
| H | — | protein | 691 | — | A0QUE0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YXU · Structure of mycobacterium smegmatis held protein in complex with RNA polymerase core… · the same entry in another collection · chain H against H, TM-score 1.00
- A0QWT1 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (A0QWT1) · a predicted model of the same protein · chain E against A, TM-score 0.96
- A0QSL8 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha (A0QSL8) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QSL8
- Every structure of UniProt P60281
- Every structure of UniProt A0QS66
- Every structure of UniProt A0QWT1
- Every structure of UniProt A0QUE0
- Elsewhere: RCSB PDB 6YXU · PDBe 6YXU · UniProt A0QSL8 · UniProt P60281 · UniProt A0QS66 · UniProt A0QWT1 · UniProt A0QUE0
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