MolNFT v1 · #171259 · protein
Structure of mycobacterium smegmatis held protein in complex with RNA polymerase core - state II, primary channel engaged and active site interfering
6YYS: “Structure of mycobacterium smegmatis held protein in complex with RNA polymerase core - state II, primary…”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #171259 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YYS
- Type
- protein
- Length
- 3,597 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0QSL8, P60281, A0QS66, A0QWT1, A0QUE0
- Ligands
- ZN, MG
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 224 | — | A0QSL8 |
| B | — | protein | 233 | — | A0QSL8 |
| C | — | protein | 1089 | — | P60281 |
| D | — | protein | 1278 | — | A0QS66 |
| E | — | protein | 83 | — | A0QWT1 |
| H | — | protein | 690 | — | A0QUE0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YYS · Structure of Mycobacterium smegmatis HelD protein in complex with RNA polymerase core… · the same entry in another collection · chain H against H, TM-score 1.00
- P60281 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (P60281) · a predicted model of the same protein · chain C against A, TM-score 0.98
- A0QSL8 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha (A0QSL8) · a predicted model of the same protein · chain A against A, TM-score 0.96
- A0QWT1 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (A0QWT1) · a predicted model of the same protein · chain E against A, TM-score 0.92
- A0QS66 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta' (A0QS66) · a predicted model of the same protein · chain D against A, TM-score 0.79
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QSL8
- Every structure of UniProt P60281
- Every structure of UniProt A0QS66
- Every structure of UniProt A0QWT1
- Every structure of UniProt A0QUE0
- Elsewhere: RCSB PDB 6YYS · PDBe 6YYS · UniProt A0QSL8 · UniProt P60281 · UniProt A0QS66 · UniProt A0QWT1 · UniProt A0QUE0
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