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AlphaFold monomer V2.0 prediction for pre-mRNA-splicing factor ATP- dependent RNA helicase PRP22 (P24384)

Analyse AlphaFold monomer V2.0 prediction for pre-mRNA-splicing factor ATP- dependent… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession
P24384
Type
protein
Length
1,145 residues
Chains
1
Collection
MolNFT v1 / AlphaFold
Contract
0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner
0x301d5A363B42a0830e9c585148Cf4D91Fb385a2f
Molecule
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
UniProt
P24384
Pockets
17 · best druggability 0.78

Structure

1 distinct chain · 43% helix, 15% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
APre-mRNA-splicing factor ATP-dependent RNA helicase PRP22protein114543% helix, 15% strandP24384

Pockets

17 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
17160.780.8276empty
25200.760.8459empty
32350.670.8436empty
44320.640.7842empty
51440.500.7925empty

Compared structures

  • 9DTR · Structure of the yeast post-catalytic P complex spliceosome at 2.3 Angstrom resolution · an experimental structure of the same protein · chain A against V, TM-score 0.60
  • 6EXN · Post-catalytic P complex spliceosome with 3' splice site docked · an experimental structure of the same protein · chain A against V, TM-score 0.53
  • 6EXN · Post-catalytic P complex spliceosome with 3' splice site docked · an experimental structure of the same protein · chain A against V, TM-score 0.53
  • 5YLZ · Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6… · an experimental structure of the same protein · chain A against W, TM-score 0.53
  • 5YLZ · Cryo-EM structure of the post-catalytic spliceosome from saccharomyces cerevisiae at 3.6… · an experimental structure of the same protein · chain A against W, TM-score 0.53
  • 5MQ0 · Structure of a spliceosome remodeled for exon ligation · an experimental structure of the same protein · chain A against V, TM-score 0.53
  • 5MQ0 · Structure of a spliceosome remodeled for exon ligation · an experimental structure of the same protein · chain A against V, TM-score 0.53
  • 6BK8 · S. cerevisiae spliceosomal post-catalytic P complex · an experimental structure of the same protein · chain A against P, TM-score 0.52
  • 6BK8 · S. cerevisiae spliceosomal post-catalytic P complex · an experimental structure of the same protein · chain A against P, TM-score 0.52

Analyse

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