Research workbench
AlphaFold monomer V2.0 prediction for pre-mRNA-splicing factor ATP- dependent RNA helicase PRP22 (P24384)
Analyse AlphaFold monomer V2.0 prediction for pre-mRNA-splicing factor ATP- dependent… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P24384
- Type
- protein
- Length
- 1,145 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x301d5A363B42a0830e9c585148Cf4D91Fb385a2f
- Molecule
- Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
- UniProt
- P24384
- Pockets
- 17 · best druggability 0.78
Structure
1 distinct chain · 43% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 | protein | 1145 | 43% helix, 15% strand | P24384 |
Pockets
17 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 716 | 0.78 | 0.82 | 76 | empty |
| 2 | 520 | 0.76 | 0.84 | 59 | empty |
| 3 | 235 | 0.67 | 0.84 | 36 | empty |
| 4 | 432 | 0.64 | 0.78 | 42 | empty |
| 5 | 144 | 0.50 | 0.79 | 25 | empty |
Compared structures
- 9DTR · Structure of the yeast post-catalytic P complex spliceosome at 2.3 Angstrom resolution · an experimental structure of the same protein · chain A against V, TM-score 0.60
- 6EXN · Post-catalytic P complex spliceosome with 3' splice site docked · an experimental structure of the same protein · chain A against V, TM-score 0.53
- 6EXN · Post-catalytic P complex spliceosome with 3' splice site docked · an experimental structure of the same protein · chain A against V, TM-score 0.53
- 5YLZ · Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6… · an experimental structure of the same protein · chain A against W, TM-score 0.53
- 5YLZ · Cryo-EM structure of the post-catalytic spliceosome from saccharomyces cerevisiae at 3.6… · an experimental structure of the same protein · chain A against W, TM-score 0.53
- 5MQ0 · Structure of a spliceosome remodeled for exon ligation · an experimental structure of the same protein · chain A against V, TM-score 0.53
- 5MQ0 · Structure of a spliceosome remodeled for exon ligation · an experimental structure of the same protein · chain A against V, TM-score 0.53
- 6BK8 · S. cerevisiae spliceosomal post-catalytic P complex · an experimental structure of the same protein · chain A against P, TM-score 0.52
- 6BK8 · S. cerevisiae spliceosomal post-catalytic P complex · an experimental structure of the same protein · chain A against P, TM-score 0.52
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24384
- Elsewhere: UniProt P24384 · AlphaFold DB P24384
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