UniProt P9WG45
DNA gyrase subunit B (P9WG45)
DNA gyrase subunit B (UniProt P9WG45), EC 5.6.2.2, 5.99.1.3: 15 experimental structures and 1 predicted model on GenesisL1, 6 ligands bound, 72 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- P9WG45
- Protein
- DNA gyrase subunit B
- EC
- 5.6.2.2, 5.99.1.3
- Experimental structures
- 15
- Predicted models
- 1
- Ligands
- 6
- Pockets
- 72 · 6 records with a druggable one
Structures
16 records of P9WG45 in the MolNFT archive: 15 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5BS8 | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | MG, MFX | 12 (best 0.85) |
| 5BS8 | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | — | — |
| 5BTA | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | MG, MFX | 10 (best 0.86) |
| 5BTA | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | — | — |
| 5BTC | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | — | — |
| 5BTD | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | MG, GFN | 12 (best 0.74) |
| 5BTD | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | — | — |
| 5BTF | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | — | — |
| 5BTG | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | — | — |
| 5BTI | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | MG, LFX | 9 (best 0.86) |
| 5BTI | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | — | — |
| 5BTN | Crystal structure of a topoisomerase II complex | x-ray diffraction | B, D | — | — |
| 7UGW | M. tuberculosis DNA gyrase cleavage core bound to DNA and evybactin | x-ray diffraction | B, D | MG | 12 (best 0.84) |
| 7UGW | M. tuberculosis DNA gyrase cleavage core bound to DNA and evybactin | x-ray diffraction | B, D | MG | — |
| 9FOY | Ternary complex of a Mycobacterium tuberculosis DNA gyrase core fusion with DNA and the inhibitor… | x-ray diffraction | A, B | A1ID8, A1ID9 | 17 (best 0.82) |
| P9WG45 | AlphaFold monomer V2.0 prediction for DNA gyrase subunit B (P9WG45) | predicted | A | — | — |
Ligands
- MG · Magnesium ion · in 6 records
- MFX · 1-cyclopropyl-6-fluoro-8-methoxy-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid · in 2 records
- A1ID8 · (1~{S})-2-[4-[[4-bromanyl-3,5-bis(fluoranyl)phenyl]methylamino]cyclohexyl]-1-(6-methoxy-1,5-naphthyridin-4-yl)ethanol · in 1 record
- A1ID9 · (1~{R})-2-[4-[[4-bromanyl-3,5-bis(fluoranyl)phenyl]methylamino]cyclohexyl]-1-(6-methoxy-1,5-naphthyridin-4-yl)ethanol · in 1 record
- GFN · 1-cyclopropyl-6-fluoro-8-methoxy-7-[(3S)-3-methylpiperazin-1-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid · in 1 record
- LFX · (3S)-9-fluoro-3-methyl-10-(4-methylpiperazin-1-yl)-7-oxo-2,3-dihydro-7H-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylic acid · in 1 record
Experiment against prediction
- 5BTA chain B against the predicted model P9WG45: TM-score 0.91, RMSD 1.89 Å
- 5BTA chain B against the predicted model P9WG45: TM-score 0.91, RMSD 1.89 Å
- 5BTG chain B against the predicted model P9WG45: TM-score 0.91, RMSD 1.89 Å
- 5BTI chain B against the predicted model P9WG45: TM-score 0.91, RMSD 1.89 Å
- 5BTI chain B against the predicted model P9WG45: TM-score 0.91, RMSD 1.89 Å
- 5BTN chain B against the predicted model P9WG45: TM-score 0.91, RMSD 1.91 Å
- 5BTC chain B against the predicted model P9WG45: TM-score 0.91, RMSD 1.91 Å
- 5BTD chain B against the predicted model P9WG45: TM-score 0.91, RMSD 1.84 Å
- 5BTD chain B against the predicted model P9WG45: TM-score 0.91, RMSD 1.84 Å
- 5BS8 chain B against the predicted model P9WG45: TM-score 0.91, RMSD 1.92 Å
Elsewhere
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