UniProt P51765

Photosystem II protein D1 (P51765)

Photosystem II protein D1 (UniProt P51765), EC 1.10.3.9: 58 experimental structures and 1 predicted model on GenesisL1, 19 ligands bound, 332 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…

UniProt: P51765
Protein: Photosystem II protein D1
EC: 1.10.3.9
Experimental structures: 58
Predicted models: 1
Ligands: 19
Pockets: 332 · 29 records with a druggable one

Structures

59 records of P51765 in the MolNFT archive: 58 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
1IZL	Crystal Structure of Photosystem II	x-ray diffraction	A, J	—	—
1IZL	Crystal structure of photosystem II	x-ray diffraction	A, J	—	—
3A0B	Crystal structure of Br-substituted Photosystem II complex	x-ray diffraction	A, a	—	—
3A0B	Crystal structure of br-substituted photosystem II complex	x-ray diffraction	A, a	—	—
3A0H	Crystal structure of I-substituted Photosystem II complex	x-ray diffraction	A, a	—	—
3A0H	Crystal structure of I-substituted photosystem II complex	x-ray diffraction	A, a	—	—
3WU2	Crystal structure analysis of Photosystem II complex	x-ray diffraction	A, a	—	—
3WU2	Crystal structure analysis of photosystem II complex	x-ray diffraction	A, a	—	—
4IL6	Structure of Sr-substituted photosystem II	x-ray diffraction	A, a	—	—
4IL6	Structure of sr-substituted photosystem II	x-ray diffraction	A, a	—	—
5B5E	Crystal structure analysis of photosystem II complex	x-ray diffraction	A, a	—	—
5B66	Crystal structure analysis of photosystem II complex	x-ray diffraction	A, a	—	—
5V2C	Re-refinement of crystal structure of photosystem II complex	x-ray diffraction	A, a	OEX, FE2, CL, BCT, CLA, PHO	12 (best 0.83)
5V2C	Re-refinement of crystal structure of photosystem II complex	x-ray diffraction	A, a	OEX, FE2, CL, BCT, CLA, PHO	—
6JLJ	Xfel structure of cyanobacterial photosystem II (dark state, DATASET1)	x-ray diffraction	A, a	FE2, CL, BCT, CLA, PHO, BCR	—
6JLK	XFEL structure of cyanobacterial photosystem II (1F state, dataset1)	x-ray diffraction	A, a	FE2, CL, BCT, CLA, PHO, BCR	12 (best 0.84)
6JLK	Xfel structure of cyanobacterial photosystem II (1F state, DATASET1)	x-ray diffraction	A, a	FE2, CL, BCT, CLA, PHO, BCR	—
6JLL	XFEL structure of cyanobacterial photosystem II (2F state, dataset1)	x-ray diffraction	A, a	FE2, CL, BCT, CLA, PHO, BCR	12 (best 0.83)
6JLL	Xfel structure of cyanobacterial photosystem II (2F state, DATASET1)	x-ray diffraction	A, a	FE2, CL, BCT, CLA, PHO, BCR	—
6JLM	XFEL structure of cyanobacterial photosystem II (dark state, dataset2)	x-ray diffraction	A, a	FE2, CL, BCT, CLA, PHO, BCR	12 (best 0.83)
6JLM	Xfel structure of cyanobacterial photosystem II (dark state, DATASET2)	x-ray diffraction	A, a	FE2, CL, BCT, CLA, PHO, BCR	—
6JLN	XFEL structure of cyanobacterial photosystem II (1F state, dataset2)	x-ray diffraction	A, a	FE2, CL, BCT, CLA, PHO, BCR	12 (best 0.83)
6JLN	Xfel structure of cyanobacterial photosystem II (1F state, DATASET2)	x-ray diffraction	A, a	FE2, CL, BCT, CLA, PHO, BCR	—
6JLO	Xfel structure of cyanobacterial photosystem II (2F state, DATASET2)	x-ray diffraction	A, a	CL, BCT, CLA, PHO, BCR, SQD	—
6JLP	XFEL structure of cyanobacterial photosystem II (3F state, dataset2)	x-ray diffraction	A, a	FE2, CL, CLA, BCR, SQD, OEX	11 (best 0.83)
6JLP	Xfel structure of cyanobacterial photosystem II (3F state, DATASET2)	x-ray diffraction	A, a	FE2, CL, CLA, BCR, SQD, OEX	—
7CJI	Photosystem II structure in the S1 state	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	—
7CJJ	Photosystem II structure in the S2 state	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	12 (best 0.83)
7CJJ	Photosystem II structure in the S2 state	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	—
7COU	Structure of cyanobacterial photosystem II in the dark S1 state	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	12 (best 0.82)
7COU	Structure of cyanobacterial photosystem II in the dark S1 state	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	—
7CZL	Structural insights into a dimeric Psb27-photosystem II complex from a cyanobacterium…	electron microscopy	A, a	CLA, PHO, PQ9, BCR, LHG, SQD	15 (best 0.83)
7CZL	Structural insights into a dimeric PSB27-photosystem II complex from a cyanobacterium…	electron microscopy	A, a	CLA, PHO, PQ9, BCR, LHG, SQD	—
7D1T	Cryo-EM Structure of PSII at 1.95 angstrom resolution	electron microscopy	A, a	OEX, FE2, CL, CLA, PHO, BCR	—
7D1T	Cryo-EM structure of psii at 1.95 ångström resolution	electron microscopy	A, a	OEX, FE2, CL, CLA, PHO, BCR	—
7D1U	Cryo-EM Structure of PSII at 2.08 angstrom resolution	electron microscopy	A, a	OEX, FE2, CL, CLA, PHO, BCR	12 (best 0.85)
7D1U	Cryo-EM structure of psii at 2.08 ångström resolution	electron microscopy	A, a	OEX, FE2, CL, CLA, PHO, BCR	—
7DXA	PSII intermediate Psb28-RC47	electron microscopy	a	SQD, CLA, PHO, BCR, CL, MGE	9 (best 0.84)
7DXA	Psii intermediate PSB28-RC47	electron microscopy	a	SQD, CLA, PHO, BCR, CL, MGE	—
7DXH	Cryo-EM structure of PSII intermediate Psb28-PSII complex	electron microscopy	a	SQD, CLA, BCR, CL, DGD, MGE	9 (best 0.81)
7DXH	Cryo-EM structure of psii intermediate PSB28-psii complex	electron microscopy	a	SQD, CLA, BCR, CL, DGD, PHO	—
7EDA	Structure of monomeric photosystem II	electron microscopy	A	OEX, FE2, CLA, PHO, BCR, SQD	11 (best 0.81)
7EDA	Structure of monomeric photosystem II	electron microscopy	A	OEX, FE2, CLA, PHO, BCR, SQD	—
8GN1	Crystal structure of DBBQ-bound photosystem II complex	x-ray diffraction	A, a	OEX, FE2, CL, CLA, PHO, BCR	12 (best 0.83)
8GN2	Crystal structure of PPBQ-bound photosystem II complex	x-ray diffraction	A, a	OEX, FE2, CL, CLA, PHO, BCR	12 (best 0.83)
8IR5	XFEL structure of cyanobacterial photosystem II under dark conditions	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	12 (best 0.84)
8IR6	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 20-nanosecond delay	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	12 (best 0.81)
8IR7	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-nanosecond delay	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	12 (best 0.83)
8IR8	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 1-microsecond delay	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	12 (best 0.82)
8IR9	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 30-microsecond delay	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	11 (best 0.81)
8IRA	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-microsecond…	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	12 (best 0.81)
8IRB	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	12 (best 0.83)
8IRC	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay…	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	11 (best 0.83)
8IRD	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 20-nanosecond…	x-ray diffraction	A, a	FE2, CL, CLA, BCR, SQD, OEX	12 (best 0.82)
8IRE	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 200-nanosecond…	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	12 (best 0.82)
8IRF	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 1-microsecond…	x-ray diffraction	A, a	FE2, CL, CLA, PHO, BCR, SQD	12 (best 0.82)
8IRG	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 30-microsecond…	x-ray diffraction	A, a	FE2, CL, CLA, BCR, SQD, OEX	12 (best 0.84)
8IRI	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 5-millisecond…	x-ray diffraction	A, a	OEY, CL, CLA, PHO, BCR, SQD	11 (best 0.83)
P51765	AlphaFold monomer V2.0 prediction for photosystem II protein D1 (P51765)	predicted	A	—	4 (best 0.69)

Ligands

BCR · Beta-carotene · in 46 records
CLA · Chlorophyll A · in 46 records
FE2 · Fe (II) ion · in 46 records
PHO · Pheophytin A · in 46 records
SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 46 records
DGD · Digalactosyl diacyl glycerol (dgdg) · in 44 records
BCT · Bicarbonate ion · in 42 records
CL · Chloride ion · in 42 records
LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 42 records
LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 40 records
OEX · Ca-MN4-O5 cluster · in 40 records
PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 40 records
UNL · Unknown ligand · in 36 records
CA · Calcium ion · in 18 records
OEY · Ca-MN4-O6 cluster · in 8 records
MGE · (1S)-2-(alpha-L-allopyranosyloxy)-1-[(tridecanoyloxy) methyl]ethyl palmitate · in 6 records
PQ9 · 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-heptamethyloctacosa-2,6,10,14,18,22,26-heptaenyl]-2,3-dimethylbenzo-1,4-quinone · in 5 records
K2I · 2,5-bis(bromanyl)cyclohexa-2,5-diene-1,4-dione · in 1 record
K3C · 2-phenylcyclohexa-2,5-diene-1,4-dione · in 1 record

Experiment against prediction

8IR9 chain A against the predicted model P51765: TM-score 1.00, RMSD 0.31 Å
8IR6 chain A against the predicted model P51765: TM-score 1.00, RMSD 0.31 Å
8IRB chain A against the predicted model P51765: TM-score 1.00, RMSD 0.31 Å
8IR5 chain A against the predicted model P51765: TM-score 1.00, RMSD 0.31 Å
8IRA chain A against the predicted model P51765: TM-score 1.00, RMSD 0.31 Å
8IRD chain A against the predicted model P51765: TM-score 1.00, RMSD 0.31 Å
8IRG chain A against the predicted model P51765: TM-score 1.00, RMSD 0.31 Å
8IRF chain A against the predicted model P51765: TM-score 1.00, RMSD 0.31 Å
7CJI chain A against the predicted model P51765: TM-score 1.00, RMSD 0.31 Å
8IR8 chain A against the predicted model P51765: TM-score 1.00, RMSD 0.31 Å

Elsewhere

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.