UniProt P0DTC9
Nucleoprotein (P0DTC9)
Nucleoprotein (UniProt P0DTC9): 85 experimental structures on GenesisL1, 18 ligands bound, 136 pockets. Binding sites, pockets, druggability and 3D structures in GL1X.
- UniProt
- P0DTC9
- Protein
- Nucleoprotein
- Experimental structures
- 85
- Predicted models
- 0
- Ligands
- 18
- Pockets
- 136 · 25 records with a druggable one
Structures
85 records of P0DTC9 in the MolNFT archive: 85 experimental, 0 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6M3M | Crystal structure of SARS-CoV-2 nucleocapsid protein N-terminal RNA binding domain | x-ray diffraction | A, B, C, D | — | 3 (best 0.79) |
| 6M3M | Crystal structure of SARS-cov-2 nucleocapsid protein N-terminal RNA binding domain | x-ray diffraction | A, B, C, D | — | — |
| 6VYO | Crystal structure of RNA binding domain of nucleocapsid phosphoprotein from SARS coronavirus 2 | x-ray diffraction | A, B, C, D | CL, ZN | — |
| 6WJI | 2.05 ångström resolution crystal structure of C-terminal dimerization domain of nucleocapsid… | x-ray diffraction | A, B, C, D, E, F | CL | — |
| 6WKP | Crystal structure of RNA-binding domain of nucleocapsid phosphoprotein from SARS cov-2, monoclinic… | x-ray diffraction | A, B, C, D | ZN | — |
| 6WZO | Structure of SARS-CoV-2 Nucleocapsid dimerization domain, P1 form | x-ray diffraction | A, B, C, D | — | 5 (best 0.46) |
| 6WZO | Structure of SARS-cov-2 nucleocapsid dimerization domain, P1 form | x-ray diffraction | A, B, C, D | — | — |
| 6WZQ | Structure of SARS-CoV-2 Nucleocapsid dimerization domain, P21 form | x-ray diffraction | A, B, C, D | SO4 | 3 (best 0.72) |
| 6WZQ | Structure of SARS-cov-2 nucleocapsid dimerization domain, P21 form | x-ray diffraction | A, B, C, D | SO4 | — |
| 6YI3 | The N-terminal RNA-binding domain of the SARS-CoV-2 nucleocapsid phosphoprotein | solution nmr | A | — | 1 (best 0.27) |
| 6YI3 | The N-terminal RNA-binding domain of the SARS-cov-2 nucleocapsid phosphoprotein | solution nmr | A | — | — |
| 6YUN | 1.45 ångström resolution crystal structure of C-terminal dimerization domain of nucleocapsid… | x-ray diffraction | A, B | — | — |
| 6ZCO | Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosphoprotein from SARS-CoV-2… | x-ray diffraction | A | — | 1 (best 0.62) |
| 6ZCO | Crystal structure of C-terminal dimerization domain of nucleocapsid phosphoprotein from SARS-cov-2… | x-ray diffraction | A | — | — |
| 7ACS | The SARS-cov-2 nucleocapsid phosphoprotein N-terminal domain in complex with 7MER dsrna | solution nmr | A | — | — |
| 7ACT | The SARS-cov-2 nucleocapsid phosphoprotein N-terminal domain in complex with 10MER ssrna | solution nmr | A | — | — |
| 7C22 | Crystal structure of the C-terminal domain of SARS-CoV-2 nucleocapsid protein | x-ray diffraction | A, B, C, D | — | 6 (best 0.53) |
| 7C22 | Crystal structure of the C-terminal domain of SARS-cov-2 nucleocapsid protein | x-ray diffraction | A, B, C, D | — | — |
| 7CDZ | Crystal structure of 2019-nCoV nucleocapsid N-terminal domain (NTD) protein | x-ray diffraction | A, B, C, D | — | 7 (best 0.85) |
| 7CDZ | Crystal structure of 2019-ncov nucleocapsid N-terminal domain (ntd) protein | x-ray diffraction | A, B, C, D | — | — |
| 7CE0 | Crystal structure of 2019-ncov nucleocapsid C-terminal domain (ctd) protein | x-ray diffraction | A, B, C, D | — | — |
| 7CR5 | Complex structure of a human monoclonal antibody with SARS-CoV-2 nucleocapsid protein NTD | x-ray diffraction | A | ZN | 1 (best 0.52) |
| 7CR5 | Complex structure of a human monoclonal antibody with SARS-cov-2 nucleocapsid protein ntd | x-ray diffraction | A | ZN | — |
| 7DE1 | Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal RNA binding domain | x-ray diffraction | A, B | — | — |
| 7DE1 | Crystal structure of SARS-cov-2 nucleocapsid protein C-terminal RNA binding domain | x-ray diffraction | A, B | — | — |
| 7F2B | Crystal structure of SARS-cov-2 nucleocapsid protein C-terminal RNA binding domain at 2.0A… | x-ray diffraction | B, A | PO4, CL | — |
| 7F2E | SARS-CoV-2 nucleocapsid protein C-terminal domain (dodecamer) | x-ray diffraction | B, A, C, D, E, F, G, H, I, J, K, L | PO4 | 12 (best 0.75) |
| 7F2E | SARS-cov-2 nucleocapsid protein C-terminal domain (dodecamer) | x-ray diffraction | B, A, C, D, E, F, G, H, I, J, K, L | PO4 | — |
| 7KGO | Crystal Structure of HLA-A*0201in complex with SARS-CoV-2 N351-359 | x-ray diffraction | C | — | — |
| 7KGO | Crystal structure of HLA-A*0201IN complex with SARS-cov-2 N351-359 | x-ray diffraction | C | — | — |
| 7KGP | Crystal Structure of HLA-A*0201 in complex with SARS-CoV-2 N316-324 | x-ray diffraction | C | — | — |
| 7KGP | Crystal structure of HLA-A*0201 in complex with SARS-cov-2 N316-324 | x-ray diffraction | C | — | — |
| 7KGQ | Crystal Structure of HLA-A*0201in complex with SARS-CoV-2 N222-230 | x-ray diffraction | C | — | — |
| 7KGQ | Crystal structure of HLA-A*0201IN complex with SARS-cov-2 N222-230 | x-ray diffraction | C | — | — |
| 7KGR | Crystal structure of HLA-A*0201IN complex with SARS-cov-2 N159-167 | x-ray diffraction | C | — | — |
| 7KGS | Crystal structure of HLA-A*0201 in complex with SARS-cov-2 N138-146 | x-ray diffraction | C | — | — |
| 7KGT | Crystal Structure of HLA-A*0201 in complex with SARS-CoV-2 N226-234 | x-ray diffraction | C | — | 1 (best 0.38) |
| 7KGT | Crystal structure of HLA-A*0201 in complex with SARS-cov-2 N226-234 | x-ray diffraction | C | — | — |
| 7LGD | HLA-B*07:02 in complex with SARS-CoV-2 nucleocapsid peptide N105-113 | x-ray diffraction | E, F | — | — |
| 7LGD | HLA-B*07:02 in complex with SARS-cov-2 nucleocapsid peptide N105-113 | x-ray diffraction | E, F | — | — |
| 7LUX | Aalall segment from the nucleoprotein of SARS-cov-2, residues 217-222, crystal form 2 | x-ray diffraction | A | — | — |
| 7LUZ | Gqtvtk segment from the nucleoprotein of SARS-cov-2, residues 243-248 | x-ray diffraction | A | — | — |
| 7LV2 | Gsqass segment from the nucleoprotein of SARS-cov-2, residues 179-184 | x-ray diffraction | A | — | — |
| 7N0I | Structure of the SARS-CoV-2 N protein C-terminal domain bound to single-domain antibody E2 | x-ray diffraction | A, B, C, D, E, F, H, G | MG | 12 (best 0.82) |
| 7N0I | Structure of the SARS-cov-2 N protein C-terminal domain bound to single-domain antibody E2 | x-ray diffraction | A, B, C, D, E, F, H, G | MG | — |
| 7N0R | Structure of the SARS-cov-2 N protein RNA-binding domain bound to single-domain antibody C2 | x-ray diffraction | A, B | SO4 | — |
| 7N3C | Crystal Structure of Human Fab S24-202 in the complex with the N-terminal Domain of Nucleocapsid… | x-ray diffraction | C | IOD, PO4 | 2 (best 0.58) |
| 7N3C | Crystal structure of human Fab S24-202 in the complex with the N- terminal domain of nucleocapsid… | x-ray diffraction | C | IOD, PO4 | — |
| 7N3D | Crystal Structure of Human Fab S24-1564 in the complex with the N-terminal Domain of Nucleocapsid… | x-ray diffraction | C | CL | 1 (best 0.44) |
| 7N3D | Crystal structure of human Fab S24-1564 in the complex with the N- terminal domain of nucleocapsid… | x-ray diffraction | C | CL | — |
| 7O05 | Crystal structure of SARS-cov-2 N-ctd | x-ray diffraction | A, B, C, D | — | — |
| 7O35 | Crystal Structure of SARS-CoV-2 N-CTD in complex with GTP (I) | x-ray diffraction | A, B, C, D | GTP | — |
| 7O35 | Crystal structure of SARS-cov-2 N-ctd in complex with GTP (I) | x-ray diffraction | A, B, C, D | GTP | — |
| 7O36 | Crystal structure of SARS-cov-2 N-ctd in complex with GTP (II) | x-ray diffraction | A, B, C, D | GTP | — |
| 7R98 | Structure of the SARS-cov-2 N protein RNA-binding domain bound to single-domain antibody B6 | x-ray diffraction | A, B, C | — | — |
| 7SD4 | SARS-CoV-2 Nucleocapsid N-terminal domain (N-NTD) protein | solid-state nmr | A | — | — |
| 7SD4 | SARS-cov-2 nucleocapsid N-terminal domain (N-ntd) protein | solid-state nmr | A | — | — |
| 7STR | Crystal structure of human Fab S24-1063 in the complex with the N- teminal domain of nucleocapsid… | x-ray diffraction | C | — | — |
| 7STS | Crystal Structure of Human Fab S24-1379 in the Complex with the N-teminal Domain of Nucleocapsid… | x-ray diffraction | C, D | — | 4 (best 0.80) |
| 7STS | Crystal structure of human Fab S24-1379 in the complex with the N- teminal domain of nucleocapsid… | x-ray diffraction | C, D | — | — |
25 records more on the page itself.
Ligands
- CL · Chloride ion · in 8 records
- SO4 · Sulfate ion · in 6 records
- PO4 · Phosphate ion · in 5 records
- ZN · Zinc ion · in 5 records
- GTP · Guanosine-5'-triphosphate · in 3 records
- IOD · Iodide ion · in 2 records
- MG · Magnesium ion · in 2 records
- NA · Sodium ion · in 2 records
- 5GP · Guanosine-5'-monophosphate · in 1 record
- 657 · 6-(trifluoromethoxy)-1,3-benzothiazol-2-amine · in 1 record
- A1H88 · 2-amino-1,3-benzothiazol-6-ol · in 1 record
- CD · Cadmium ion · in 1 record
- GKP · (2R,3R)-2,3-bis{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}butanedioic acid · in 1 record
- GMP · Guanosine · in 1 record
- GUN · Guanine · in 1 record
- K · Potassium ion · in 1 record
- SCN · Thiocyanate ion · in 1 record
- U2H · ~{N}-methyl-~{N}-[(5-phenylmethoxy-1~{H}-indol-3-yl)methyl]propan-1-amine · in 1 record
Elsewhere
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