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Ligand · GMP

GMP · Guanosine

GMP, Guanosine (C10 H13 N5 O5, 283.2 g/mol), in the MolNFT structures on GenesisL1: bound in 25 records (18 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
GMP
Formula
C10 H13 N5 O5
Class
ligand
Structures
25
PDB entries
18

Binding sites

GMP in 25 structures; the first of them:

  • 4XBA · Hnt3 · GMP A301 · binds ASN37, LEU38, TYR41, ASN50, VAL61, ARG62, ASP63, MET64 and 9 more
  • 5IGI · Macrolide 2'-phosphotransferase type I - complex with guanosine and azithromycin · GMP A401 · binds ILE38, VAL50, ARG52, TYR94, MET96, LEU97, ASP99, SER100 and 6 more
  • 5IGJ · Macrolide 2'-phosphotransferase type I - complex with guanosine and clarithromycin · GMP A401 · binds ILE38, VAL50, ARG52, TYR94, MET96, LEU97, ASP99, SER100 and 6 more
  • 5IGS · Macrolide 2'-phosphotransferase type I - complex with guanosine and oleandomycin · GMP A403 · binds ILE38, VAL50, ARG52, TYR94, MET96, LEU97, ASP99, GLY204 and 4 more
  • 5VYS · Crystal structure of the WbkC N-formyltransferase (C47S variant) from Brucella melitensis · GMP B303 · binds ARG88, SER89, LEU90, HIS107, GLY116, THR117, PHE142, ASP143 and 1 more
  • 6D9M · T4-Lysozyme fusion to Geobacter GGDEF · GMP A203 · binds LEU5, PHE42, LYS43, ASN46, HIS51, GLY54, SER55, LEU58 and 3 more
  • 6HYQ · Regulatory subunit of a cAMP-independent protein kinase A from Trypanosoma cruzi bound to… · GMP A601 · binds MET272, ILE292, LYS294, TYR300, LYS302, ALA307, VAL308, GLY309 and 7 more
  • 6LS1 · Ribonuclease from Hericium erinaceus active and GMP binding form · GMP A201 · binds TYR32, HIS34, GLN35, TYR36, HIS37, ASP38, TYR39, GLU40 and 4 more
  • 6VWP · Crystal structure of E. coli guanosine kinase in complex with ppGpp · GMP A502 · binds ASP40, GLN41, LEU43, ASP45, SER65, GLY92, GLY93, THR94 and 9 more
  • 6YK9 · [Fe]-hydrogenase from Methanolacinia paynteri with bound guanylylpyridinol at 1.7-A… · GMP E401 · binds LEU9, GLY10, ALA11, GLY12, SER65, ASP66, PRO67, PRO113 and 5 more
  • 7DQN · The structure of the Arabidopsis thaliana guanosine deaminase mutant Y185F complexed with… · GMP A201 · binds PHE53, ASN69, HIS80, ALA81, GLU82, CYS107, GLU108, PRO109 and 8 more
  • 7VNX · Crystal structure of TkArkI · GMP A1001 · binds LEU30, ARG95, PHE97, ALA98, GLY100, LYS137, ILE140, ILE148 and 1 more
  • 7X0R · Crystal structure of substrate binding protein Lbp complexed wtih guanosine from… · GMP A401 · binds ASP53, VAL54, GLY55, ASP59, SER61, PHE62, ASN63, GLY111 and 12 more
  • 7XXK · Crystal structure of SARS-CoV-2 N-CTD in complex with GMP · GMP F401 · binds ARG259, THR282, TRP330, MET317, ALA336, ILE337, LYS338
  • 5VYR · Crystal structure of the wbkc formyl transferase from brucella melitensis · GMP A304 · binds MET225, PHE227, PHE230, PRO231

Residues it binds most

ASP 59, GLY 53, VAL 43, PHE 58, LEU 66, TYR 43, ARG 47, ILE 44, ALA 31, ASN 30 (residue and the binding sites it lines).

Found with

  • 5GP · Guanosine-5'-monophosphate
  • K · Potassium ion
  • MG · Magnesium ion
  • ZN · Zinc ion
  • EDO · 1,2-ethanediol
  • ACT · Acetate ion
  • CL · Chloride ion
  • GOL · Glycerol
  • IPA · Isopropyl alcohol
  • 1YJ · N-[4-({[(6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid
  • FEG · 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine
  • G4P · Guanosine-5',3'-tetraphosphate

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