UniProt P02947
Light-harvesting protein B-870 alpha chain (P02947)
Light-harvesting protein B-870 alpha chain (UniProt P02947): 5 experimental structures and 1 predicted model on GenesisL1, 8 ligands bound, 32 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- P02947
- Protein
- Light-harvesting protein B-870 alpha chain
- Experimental structures
- 5
- Predicted models
- 1
- Ligands
- 8
- Pockets
- 32 · 2 records with a druggable one
Structures
6 records of P02947 in the MolNFT archive: 5 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1XRD | Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum | solution nmr | A | — | — |
| 1XRD | Light-harvesting complex 1 alfa subunit from wild-type rhodospirillum rubrum | solution nmr | A | — | — |
| 7EQD | Structure of photosynthetic LH1-rc super-complex of rhodospirillum rubrum | electron microscopy | A, D, F, I, K, O, Q, S, U, W, Y, 1, 3, 5, 7, 9 | PGV, RQ0, CRT, CDL, PEF, 07D | 16 (best 0.80) |
| 7EQD | Structure of photosynthetic LH1-rc super-complex of rhodospirillum rubrum | electron microscopy | A, D, F, I, K, O, Q, S, U, W, Y, 1, 3, 5, 7, 9 | PGV, RQ0, CRT, CDL, PEF, 07D | — |
| 9K3Q | Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex | electron microscopy | 2, 4, 6, 8, A, D, E, F, G, J, N, R, T, V, X, Z | 07D, CRT, U10, BPH | 16 (best 0.78) |
| P02947 | AlphaFold monomer V2.0 prediction for light-harvesting protein B-870 alpha chain (P02947) | predicted | A | — | — |
Ligands
- 07D · Trans-Geranyl BACTERIOCHLOROPHYLL A · in 3 records
- CRT · Spirilloxanthin · in 3 records
- CDL · Cardiolipin · in 2 records
- PEF · Di-palmitoyl-3-sn-phosphatidylethanolamine · in 2 records
- PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate · in 2 records
- RQ0 · 2-azanyl-5-[(2~{E},6~{E},8~{E},10~{E},12~{E},14~{E}, 18~{E},22~{E},26~{E},30~{E},34~{E})-3,7,11,15,19,23, 27,31,35,39-decamethyltetraconta-2,6,8,10,12,14,18,22, 26,30,34,38-dodecaenyl]-3-methoxy-6-methyl-cyclohexa-2,5-diene-1,4-dione · in 2 records
- BPH · Bacteriopheophytin A · in 1 record
- U10 · Ubiquinone-10 · in 1 record
Experiment against prediction
- 1XRD chain A against the predicted model P02947: TM-score 0.59, RMSD 2.32 Å
- 1XRD chain A against the predicted model P02947: TM-score 0.59, RMSD 2.32 Å
- 9K3Q chain J against the predicted model P02947: TM-score 0.55, RMSD 2.78 Å
- 9K3Q chain 6 against the predicted model P02947: TM-score 0.54, RMSD 2.03 Å
- 9K3Q chain T against the predicted model P02947: TM-score 0.54, RMSD 2.21 Å
- 9K3Q chain V against the predicted model P02947: TM-score 0.54, RMSD 1.93 Å
- 9K3Q chain X against the predicted model P02947: TM-score 0.54, RMSD 2.24 Å
- 9K3Q chain 8 against the predicted model P02947: TM-score 0.54, RMSD 2.47 Å
- 9K3Q chain N against the predicted model P02947: TM-score 0.54, RMSD 2.03 Å
- 9K3Q chain Z against the predicted model P02947: TM-score 0.54, RMSD 2.04 Å
Elsewhere
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