UniProt O15498
Synaptobrevin homolog YKT6 (O15498)
Synaptobrevin homolog YKT6 (UniProt O15498), EC 2.3.1.-: 6 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 6 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- O15498
- Protein
- Synaptobrevin homolog YKT6
- EC
- 2.3.1.-
- Experimental structures
- 6
- Predicted models
- 1
- Ligands
- 3
- Pockets
- 6 · 2 records with a druggable one
Structures
7 records of O15498 in the MolNFT archive: 6 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6J74 | Complex of GGTaseIII and full-length Ykt6 | x-ray diffraction | C | — | — |
| 6J74 | Complex of ggtaseiii and full-length YKT6 | x-ray diffraction | C | — | — |
| 6J7F | Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP | x-ray diffraction | C | FAR, GER, DPO | — |
| 6J7F | Complex of ggtaseiii, farnesyl-YKT6 (C-terminal methylated), and ggpp | x-ray diffraction | C | FAR, GER, DPO | — |
| 6J7X | Complex of GGTaseIII, farnesyl-Ykt6, and GGPP | x-ray diffraction | C | — | 4 (best 0.81) |
| 6J7X | Complex of ggtaseiii, farnesyl-YKT6, and ggpp | x-ray diffraction | C | — | — |
| O15498 | AlphaFold monomer V2.0 prediction for synaptobrevin homolog YKT6 (O15498) | predicted | A | — | 2 (best 0.70) |
Ligands
Experiment against prediction
- 6J74 chain C against the predicted model O15498: TM-score 0.98, RMSD 0.65 Å
- 6J74 chain C against the predicted model O15498: TM-score 0.98, RMSD 0.65 Å
- 6J7X chain C against the predicted model O15498: TM-score 0.98, RMSD 0.88 Å
- 6J7X chain C against the predicted model O15498: TM-score 0.98, RMSD 0.88 Å
- 6J7F chain C against the predicted model O15498: TM-score 0.96, RMSD 1.28 Å
- 6J7F chain C against the predicted model O15498: TM-score 0.96, RMSD 1.28 Å
Elsewhere
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