UniProt B0B9A0
Deubiquitinase and deneddylase Dub1 (B0B9A0)
Deubiquitinase and deneddylase Dub1 (UniProt B0B9A0), EC 3.4.22.-: 11 experimental structures and 1 predicted model on GenesisL1, 5 ligands bound, 10 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- B0B9A0
- Protein
- Deubiquitinase and deneddylase Dub1
- EC
- 3.4.22.-
- Experimental structures
- 11
- Predicted models
- 1
- Ligands
- 5
- Pockets
- 10 · 2 records with a druggable one
Structures
12 records of B0B9A0 in the MolNFT archive: 11 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5HAG | Structure of Chlamydia trachomatis effector protein ChlaDUB1 | x-ray diffraction | A | — | 3 (best 0.63) |
| 5HAG | Structure of chlamydia trachomatis effector protein CHLADUB1 | x-ray diffraction | A | — | — |
| 6FDK | Structure of chlamydia trachomatis effector protein CDU1 bound to ubiquitin | x-ray diffraction | A | CL, AYE | — |
| 6FDQ | Structure of Chlamydia trachomatis effector protein Cdu1 bound to Compound 5 | x-ray diffraction | A, B | 2UQ | 7 (best 0.62) |
| 6FDQ | Structure of chlamydia trachomatis effector protein CDU1 bound to compound 5 | x-ray diffraction | A, B | 2UQ | — |
| 6FDU | Structure of Chlamydia trachomatis effector protein Cdu1 bound to Compound 3 | x-ray diffraction | A, B | CL | — |
| 6FDU | Structure of chlamydia trachomatis effector protein CDU1 bound to compound 3 | x-ray diffraction | A, B | CL | — |
| 6GZS | Structure of Chlamydia trachomatis effector protein ChlaDUB1 bound to ubiquitin | x-ray diffraction | A | SO4, AYE | — |
| 6GZS | Structure of chlamydia trachomatis effector protein CHLADUB1 bound to ubiquitin | x-ray diffraction | A | SO4, AYE | — |
| 6GZT | Structure of Chlamydia trachomatis effector protein ChlaDUB1 bound to Coenzyme A | x-ray diffraction | A | SO4, COA | — |
| 6GZT | Structure of chlamydia trachomatis effector protein CHLADUB1 bound to coenzyme a | x-ray diffraction | A | SO4, COA | — |
| B0B9A0 | AlphaFold monomer V2.0 prediction for deubiquitinase and deneddylase DUB1 (B0B9A0) | predicted | A | — | — |
Ligands
Experiment against prediction
- 6FDQ chain B against the predicted model B0B9A0: TM-score 0.99, RMSD 0.43 Å
- 6FDQ chain B against the predicted model B0B9A0: TM-score 0.99, RMSD 0.43 Å
- 6FDQ chain A against the predicted model B0B9A0: TM-score 0.99, RMSD 0.42 Å
- 6FDQ chain A against the predicted model B0B9A0: TM-score 0.99, RMSD 0.42 Å
- 5HAG chain A against the predicted model B0B9A0: TM-score 0.99, RMSD 0.53 Å
- 5HAG chain A against the predicted model B0B9A0: TM-score 0.99, RMSD 0.53 Å
- 6GZT chain A against the predicted model B0B9A0: TM-score 0.99, RMSD 0.58 Å
- 6GZT chain A against the predicted model B0B9A0: TM-score 0.99, RMSD 0.58 Å
- 6FDU chain A against the predicted model B0B9A0: TM-score 0.99, RMSD 0.54 Å
- 6FDU chain A against the predicted model B0B9A0: TM-score 0.99, RMSD 0.54 Å
Elsewhere
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