MolNFT v1 · #148683 · protein
Structure of chlamydia trachomatis effector protein CDU1 bound to compound 5
6FDQ: “Structure of chlamydia trachomatis effector protein CDU1 bound to compound 5”. X-ray diffraction, 1 ligand (2UQ). MolNFT v1 #148683 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6FDQ
- Type
- protein
- Length
- 486 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B0B9A0
- Ligands
- 2UQ
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 239 | — | B0B9A0 |
| B | — | protein | 247 | — | B0B9A0 |
Ligands and binding sites
- 2UQ · N-benzyl-2-[(Z)-iminomethyl]pyrimidine-5-carboxamide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6FDQ · Structure of Chlamydia trachomatis effector protein Cdu1 bound to Compound 5 · the same entry in another collection · chain A against A, TM-score 1.00
- B0B9A0 · AlphaFold monomer V2.0 prediction for deubiquitinase and deneddylase DUB1 (B0B9A0) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0B9A0
- Elsewhere: RCSB PDB 6FDQ · PDBe 6FDQ · UniProt B0B9A0
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