MolNFT v2 · #149622 · protein
Structure of Chlamydia trachomatis effector protein Cdu1 bound to Compound 3
6FDU: “Structure of Chlamydia trachomatis effector protein Cdu1 bound to Compound 3”. X-ray diffraction at 2.3, 1 ligand (CL). MolNFT v2 #149622 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6FDU
- Type
- protein
- Length
- 480 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.3
- Source
- Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
- UniProt
- B0B9A0
- Ligands
- CL
Structure
x-ray diffraction · resolution 2.3 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 240 | — | B0B9A0 |
| B | — | protein | 240 | — | B0B9A0 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6FDU · Structure of chlamydia trachomatis effector protein CDU1 bound to compound 3 · the same entry in another collection · chain A against A, TM-score 1.00
- B0B9A0 · AlphaFold monomer V2.0 prediction for deubiquitinase and deneddylase DUB1 (B0B9A0) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0B9A0
- Elsewhere: RCSB PDB 6FDU · PDBe 6FDU · UniProt B0B9A0
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